miRNA display CGI


Results 1 - 20 of 163 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19216 3' -53.4 NC_004684.1 + 35709 0.7 0.663462
Target:  5'- aUGAUCGAcGGUGACCuGACcugguucaacaacaCCAGCg -3'
miRNA:   3'- gACUAGUUuCCGCUGGuCUGc-------------GGUCG- -5'
19216 3' -53.4 NC_004684.1 + 4873 0.71 0.571212
Target:  5'- gUGGUCcauuGAAGGCGGCuCAGGCGgccuggucgccaCCGGCc -3'
miRNA:   3'- gACUAG----UUUCCGCUG-GUCUGC------------GGUCG- -5'
19216 3' -53.4 NC_004684.1 + 60770 0.71 0.571212
Target:  5'- uUGGUCAGGacuugaagauGGCGACCAGGaacuCGCCucgguGCg -3'
miRNA:   3'- gACUAGUUU----------CCGCUGGUCU----GCGGu----CG- -5'
19216 3' -53.4 NC_004684.1 + 8171 0.71 0.582111
Target:  5'- -aGAUCGccgGGGGCGcgcuggGCCAGGCG-CAGCu -3'
miRNA:   3'- gaCUAGU---UUCCGC------UGGUCUGCgGUCG- -5'
19216 3' -53.4 NC_004684.1 + 33627 0.71 0.582111
Target:  5'- -gGAUCGucGGGCGGCUAccuCGUCAGCg -3'
miRNA:   3'- gaCUAGUu-UCCGCUGGUcu-GCGGUCG- -5'
19216 3' -53.4 NC_004684.1 + 27014 0.71 0.593052
Target:  5'- -cGAUCAAcagccAGGC-ACCGGGUGCCGGUg -3'
miRNA:   3'- gaCUAGUU-----UCCGcUGGUCUGCGGUCG- -5'
19216 3' -53.4 NC_004684.1 + 22993 0.7 0.604026
Target:  5'- gCUGAUCAAcggccuGGGcCGACUGGcCGCCgucGGCa -3'
miRNA:   3'- -GACUAGUU------UCC-GCUGGUCuGCGG---UCG- -5'
19216 3' -53.4 NC_004684.1 + 65999 0.7 0.615024
Target:  5'- gCUGGccagugCAAcGGCGGCCuuGGCGUCGGCc -3'
miRNA:   3'- -GACUa-----GUUuCCGCUGGu-CUGCGGUCG- -5'
19216 3' -53.4 NC_004684.1 + 2497 0.7 0.626037
Target:  5'- gCUGcuaUGAGGGCGGCCucaacGACGcCCGGCa -3'
miRNA:   3'- -GACua-GUUUCCGCUGGu----CUGC-GGUCG- -5'
19216 3' -53.4 NC_004684.1 + 15384 0.71 0.560363
Target:  5'- gUGAUCGgcuacGAGGCcGCCaucgGGGCGgCCAGCa -3'
miRNA:   3'- gACUAGU-----UUCCGcUGG----UCUGC-GGUCG- -5'
19216 3' -53.4 NC_004684.1 + 23133 0.71 0.549571
Target:  5'- uUGA-CGAAGGCuuCCGGGCGgCGGCc -3'
miRNA:   3'- gACUaGUUUCCGcuGGUCUGCgGUCG- -5'
19216 3' -53.4 NC_004684.1 + 21605 0.72 0.495693
Target:  5'- cCUGGaguUCGAGGGCGACCgccuggaGGuGCGCCuGCc -3'
miRNA:   3'- -GACU---AGUUUCCGCUGG-------UC-UGCGGuCG- -5'
19216 3' -53.4 NC_004684.1 + 25835 0.78 0.250282
Target:  5'- -cGG-CAucGGCGGCCAGAUGCuCGGCg -3'
miRNA:   3'- gaCUaGUuuCCGCUGGUCUGCG-GUCG- -5'
19216 3' -53.4 NC_004684.1 + 55604 0.77 0.291617
Target:  5'- gCUGAUCAAAGGCGuaacuCCGGAguUGCacaAGCg -3'
miRNA:   3'- -GACUAGUUUCCGCu----GGUCU--GCGg--UCG- -5'
19216 3' -53.4 NC_004684.1 + 61741 0.76 0.314211
Target:  5'- gCUGAggCAGgaauccgccacGGGCGaACCAGGCGuCCAGCu -3'
miRNA:   3'- -GACUa-GUU-----------UCCGC-UGGUCUGC-GGUCG- -5'
19216 3' -53.4 NC_004684.1 + 40707 0.75 0.363292
Target:  5'- gCUGggCGgcGGUGGCCgGGACGaCCAGCg -3'
miRNA:   3'- -GACuaGUuuCCGCUGG-UCUGC-GGUCG- -5'
19216 3' -53.4 NC_004684.1 + 2258 0.74 0.389751
Target:  5'- gCUGAUCAGcgcGGCGGCgGGcauugcCGCCAGCc -3'
miRNA:   3'- -GACUAGUUu--CCGCUGgUCu-----GCGGUCG- -5'
19216 3' -53.4 NC_004684.1 + 13230 0.73 0.465134
Target:  5'- -aGAUCAAuGGCGgggaguuccgugGCCAGGCcgugaccGCCAGCg -3'
miRNA:   3'- gaCUAGUUuCCGC------------UGGUCUG-------CGGUCG- -5'
19216 3' -53.4 NC_004684.1 + 967 0.73 0.465134
Target:  5'- -gGGUCAuuGGCGACUccgGGGCguucucgGCCAGCa -3'
miRNA:   3'- gaCUAGUuuCCGCUGG---UCUG-------CGGUCG- -5'
19216 3' -53.4 NC_004684.1 + 58141 0.73 0.476229
Target:  5'- gCUGAUCGAcauGGCGAucaCCGGGgaGCCGGUg -3'
miRNA:   3'- -GACUAGUUu--CCGCU---GGUCUg-CGGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.