miRNA display CGI


Results 1 - 20 of 163 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19216 3' -53.4 NC_004684.1 + 844 0.69 0.696215
Target:  5'- -aGAUCAAcGGCGuGCUacagcuacgcgacgaGGACGgCCAGCa -3'
miRNA:   3'- gaCUAGUUuCCGC-UGG---------------UCUGC-GGUCG- -5'
19216 3' -53.4 NC_004684.1 + 967 0.73 0.465134
Target:  5'- -gGGUCAuuGGCGACUccgGGGCguucucgGCCAGCa -3'
miRNA:   3'- gaCUAGUuuCCGCUGG---UCUG-------CGGUCG- -5'
19216 3' -53.4 NC_004684.1 + 1088 0.69 0.670043
Target:  5'- gUGAUC---GGUGACCAGGCcgcgacCCGGCg -3'
miRNA:   3'- gACUAGuuuCCGCUGGUCUGc-----GGUCG- -5'
19216 3' -53.4 NC_004684.1 + 1265 0.74 0.41744
Target:  5'- -cGA-CAccGGCGACCAcuuCGCCAGCa -3'
miRNA:   3'- gaCUaGUuuCCGCUGGUcu-GCGGUCG- -5'
19216 3' -53.4 NC_004684.1 + 2258 0.74 0.389751
Target:  5'- gCUGAUCAGcgcGGCGGCgGGcauugcCGCCAGCc -3'
miRNA:   3'- -GACUAGUUu--CCGCUGgUCu-----GCGGUCG- -5'
19216 3' -53.4 NC_004684.1 + 2497 0.7 0.626037
Target:  5'- gCUGcuaUGAGGGCGGCCucaacGACGcCCGGCa -3'
miRNA:   3'- -GACua-GUUUCCGCUGGu----CUGC-GGUCG- -5'
19216 3' -53.4 NC_004684.1 + 2758 0.67 0.79574
Target:  5'- --cGUCGAguggacguuccAGGUGuccaGCCuGGACGCCAGCg -3'
miRNA:   3'- gacUAGUU-----------UCCGC----UGG-UCUGCGGUCG- -5'
19216 3' -53.4 NC_004684.1 + 3945 0.67 0.814819
Target:  5'- aCUGGgcggCGAAGGCGACC--ACGCUg-- -3'
miRNA:   3'- -GACUa---GUUUCCGCUGGucUGCGGucg -5'
19216 3' -53.4 NC_004684.1 + 4527 0.67 0.785939
Target:  5'- cCUGuUCcGGGGCGAgaccCCGGAgGCCcGCu -3'
miRNA:   3'- -GACuAGuUUCCGCU----GGUCUgCGGuCG- -5'
19216 3' -53.4 NC_004684.1 + 4873 0.71 0.571212
Target:  5'- gUGGUCcauuGAAGGCGGCuCAGGCGgccuggucgccaCCGGCc -3'
miRNA:   3'- gACUAG----UUUCCGCUG-GUCUGC------------GGUCG- -5'
19216 3' -53.4 NC_004684.1 + 5676 0.79 0.213903
Target:  5'- gUGGUCGGAGGUGGCCGgGGC-CCGGCc -3'
miRNA:   3'- gACUAGUUUCCGCUGGU-CUGcGGUCG- -5'
19216 3' -53.4 NC_004684.1 + 6014 0.67 0.814819
Target:  5'- --cAUCGGAcgcGGUGGCCuuuAGGcCGCCAGCg -3'
miRNA:   3'- gacUAGUUU---CCGCUGG---UCU-GCGGUCG- -5'
19216 3' -53.4 NC_004684.1 + 6467 0.68 0.755617
Target:  5'- aCUGG-CcGAGGCGugC-GACGCCguGGCc -3'
miRNA:   3'- -GACUaGuUUCCGCugGuCUGCGG--UCG- -5'
19216 3' -53.4 NC_004684.1 + 6694 0.66 0.867137
Target:  5'- -aGGUCGAccuGGCcACCGucGGCGCgAGCa -3'
miRNA:   3'- gaCUAGUUu--CCGcUGGU--CUGCGgUCG- -5'
19216 3' -53.4 NC_004684.1 + 6769 0.71 0.549571
Target:  5'- cCUGcgCAuGGGCGACguG-CGCCGGg -3'
miRNA:   3'- -GACuaGUuUCCGCUGguCuGCGGUCg -5'
19216 3' -53.4 NC_004684.1 + 6835 0.67 0.77998
Target:  5'- gCUGGUCGAGuucgagggugucgacGGC-ACCGGGCG-CGGCg -3'
miRNA:   3'- -GACUAGUUU---------------CCGcUGGUCUGCgGUCG- -5'
19216 3' -53.4 NC_004684.1 + 7963 0.66 0.833129
Target:  5'- gUGggC-AAGGCcGCCAGGCgGCCGuGCg -3'
miRNA:   3'- gACuaGuUUCCGcUGGUCUG-CGGU-CG- -5'
19216 3' -53.4 NC_004684.1 + 8037 0.67 0.79574
Target:  5'- --cGUCGGcuGGCGGuccuCCAG-CGCCAGCa -3'
miRNA:   3'- gacUAGUUu-CCGCU----GGUCuGCGGUCG- -5'
19216 3' -53.4 NC_004684.1 + 8171 0.71 0.582111
Target:  5'- -aGAUCGccgGGGGCGcgcuggGCCAGGCG-CAGCu -3'
miRNA:   3'- gaCUAGU---UUCCGC------UGGUCUGCgGUCG- -5'
19216 3' -53.4 NC_004684.1 + 8918 0.66 0.833129
Target:  5'- cCUGG-CAGAucGGCGACgAGgauguGCGCCuGCa -3'
miRNA:   3'- -GACUaGUUU--CCGCUGgUC-----UGCGGuCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.