miRNA display CGI


Results 1 - 20 of 163 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19216 3' -53.4 NC_004684.1 + 41197 1.13 0.001063
Target:  5'- gCUGAUCAAAGGCGACCAGACGCCAGCg -3'
miRNA:   3'- -GACUAGUUUCCGCUGGUCUGCGGUCG- -5'
19216 3' -53.4 NC_004684.1 + 5676 0.79 0.213903
Target:  5'- gUGGUCGGAGGUGGCCGgGGC-CCGGCc -3'
miRNA:   3'- gACUAGUUUCCGCUGGU-CUGcGGUCG- -5'
19216 3' -53.4 NC_004684.1 + 19734 0.79 0.225497
Target:  5'- gCUGAUC-AAGGCGGCCA-ACGCC-GCa -3'
miRNA:   3'- -GACUAGuUUCCGCUGGUcUGCGGuCG- -5'
19216 3' -53.4 NC_004684.1 + 25835 0.78 0.250282
Target:  5'- -cGG-CAucGGCGGCCAGAUGCuCGGCg -3'
miRNA:   3'- gaCUaGUuuCCGCUGGUCUGCG-GUCG- -5'
19216 3' -53.4 NC_004684.1 + 55604 0.77 0.291617
Target:  5'- gCUGAUCAAAGGCGuaacuCCGGAguUGCacaAGCg -3'
miRNA:   3'- -GACUAGUUUCCGCu----GGUCU--GCGg--UCG- -5'
19216 3' -53.4 NC_004684.1 + 61741 0.76 0.314211
Target:  5'- gCUGAggCAGgaauccgccacGGGCGaACCAGGCGuCCAGCu -3'
miRNA:   3'- -GACUa-GUU-----------UCCGC-UGGUCUGC-GGUCG- -5'
19216 3' -53.4 NC_004684.1 + 65377 0.76 0.329996
Target:  5'- cCUGGUCAAcgucgGGGCGGuCCAGcgcccAgGCCAGCa -3'
miRNA:   3'- -GACUAGUU-----UCCGCU-GGUC-----UgCGGUCG- -5'
19216 3' -53.4 NC_004684.1 + 61348 0.75 0.354754
Target:  5'- uUGGUCAGcuGGGCcGCgAGGCGCUGGCg -3'
miRNA:   3'- gACUAGUU--UCCGcUGgUCUGCGGUCG- -5'
19216 3' -53.4 NC_004684.1 + 55769 0.75 0.363292
Target:  5'- -cGGUC--AGGCGGCC-GACGgCCAGCu -3'
miRNA:   3'- gaCUAGuuUCCGCUGGuCUGC-GGUCG- -5'
19216 3' -53.4 NC_004684.1 + 40707 0.75 0.363292
Target:  5'- gCUGggCGgcGGUGGCCgGGACGaCCAGCg -3'
miRNA:   3'- -GACuaGUuuCCGCUGG-UCUGC-GGUCG- -5'
19216 3' -53.4 NC_004684.1 + 2258 0.74 0.389751
Target:  5'- gCUGAUCAGcgcGGCGGCgGGcauugcCGCCAGCc -3'
miRNA:   3'- -GACUAGUUu--CCGCUGgUCu-----GCGGUCG- -5'
19216 3' -53.4 NC_004684.1 + 1265 0.74 0.41744
Target:  5'- -cGA-CAccGGCGACCAcuuCGCCAGCa -3'
miRNA:   3'- gaCUaGUuuCCGCUGGUcu-GCGGUCG- -5'
19216 3' -53.4 NC_004684.1 + 9338 0.74 0.426932
Target:  5'- -cGGUCAGcucguGGCGcACCAGACG-CAGCu -3'
miRNA:   3'- gaCUAGUUu----CCGC-UGGUCUGCgGUCG- -5'
19216 3' -53.4 NC_004684.1 + 27706 0.73 0.446295
Target:  5'- -cGGUCAucucGGCGGCCGaGCGCgAGCa -3'
miRNA:   3'- gaCUAGUuu--CCGCUGGUcUGCGgUCG- -5'
19216 3' -53.4 NC_004684.1 + 43716 0.73 0.446295
Target:  5'- uCUGGUCc-GGGcCGACCAGGcCGUCGGUg -3'
miRNA:   3'- -GACUAGuuUCC-GCUGGUCU-GCGGUCG- -5'
19216 3' -53.4 NC_004684.1 + 967 0.73 0.465134
Target:  5'- -gGGUCAuuGGCGACUccgGGGCguucucgGCCAGCa -3'
miRNA:   3'- gaCUAGUuuCCGCUGG---UCUG-------CGGUCG- -5'
19216 3' -53.4 NC_004684.1 + 13230 0.73 0.465134
Target:  5'- -aGAUCAAuGGCGgggaguuccgugGCCAGGCcgugaccGCCAGCg -3'
miRNA:   3'- gaCUAGUUuCCGC------------UGGUCUG-------CGGUCG- -5'
19216 3' -53.4 NC_004684.1 + 58141 0.73 0.476229
Target:  5'- gCUGAUCGAcauGGCGAucaCCGGGgaGCCGGUg -3'
miRNA:   3'- -GACUAGUUu--CCGCU---GGUCUg-CGGUCG- -5'
19216 3' -53.4 NC_004684.1 + 21605 0.72 0.495693
Target:  5'- cCUGGaguUCGAGGGCGACCgccuggaGGuGCGCCuGCc -3'
miRNA:   3'- -GACU---AGUUUCCGCUGG-------UC-UGCGGuCG- -5'
19216 3' -53.4 NC_004684.1 + 66792 0.72 0.507126
Target:  5'- -aGGUC--AGGCGGcCCGGAgGUCAGCu -3'
miRNA:   3'- gaCUAGuuUCCGCU-GGUCUgCGGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.