miRNA display CGI


Results 1 - 20 of 126 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19225 5' -62.2 NC_004684.1 + 51120 0.66 0.371452
Target:  5'- gCCGCguCGGGCCC-GGCGCgaaCACCg- -3'
miRNA:   3'- aGGUG--GCCUGGGaCCGCGug-GUGGaa -5'
19225 5' -62.2 NC_004684.1 + 40433 0.66 0.411911
Target:  5'- -gCACCGGccuuggucagcgguGCCCaGGCG-GCCGCCUg -3'
miRNA:   3'- agGUGGCC--------------UGGGaCCGCgUGGUGGAa -5'
19225 5' -62.2 NC_004684.1 + 55356 0.66 0.388335
Target:  5'- cUCCuGCUGGucgagcaugGCCUUGGC-CACCGCCg- -3'
miRNA:   3'- -AGG-UGGCC---------UGGGACCGcGUGGUGGaa -5'
19225 5' -62.2 NC_004684.1 + 2949 0.66 0.414585
Target:  5'- -gCACCGaGGCCaucGGCGCGCUGCUg- -3'
miRNA:   3'- agGUGGC-CUGGga-CCGCGUGGUGGaa -5'
19225 5' -62.2 NC_004684.1 + 40369 0.66 0.371452
Target:  5'- gCCACCGGcACCC-GGUGCcuggcuguugAUCGCCg- -3'
miRNA:   3'- aGGUGGCC-UGGGaCCGCG----------UGGUGGaa -5'
19225 5' -62.2 NC_004684.1 + 17339 0.66 0.396963
Target:  5'- cUCgACCGGuuCCUGGCcuggagccagGCACCgGCCa- -3'
miRNA:   3'- -AGgUGGCCugGGACCG----------CGUGG-UGGaa -5'
19225 5' -62.2 NC_004684.1 + 18412 0.66 0.414585
Target:  5'- cUUCGgCGG-CCCggcgGGCGCACCGgCg- -3'
miRNA:   3'- -AGGUgGCCuGGGa---CCGCGUGGUgGaa -5'
19225 5' -62.2 NC_004684.1 + 58956 0.66 0.371452
Target:  5'- -gCGCCGGGCCCUGucCGCcgaGCUGCCg- -3'
miRNA:   3'- agGUGGCCUGGGACc-GCG---UGGUGGaa -5'
19225 5' -62.2 NC_004684.1 + 11594 0.66 0.371452
Target:  5'- cCCGCCGGuGCgCCUGGaCGaCGgCACCg- -3'
miRNA:   3'- aGGUGGCC-UG-GGACC-GC-GUgGUGGaa -5'
19225 5' -62.2 NC_004684.1 + 56246 0.66 0.414585
Target:  5'- gUCCACC-GAC---GGCGCgACCACCUUg -3'
miRNA:   3'- -AGGUGGcCUGggaCCGCG-UGGUGGAA- -5'
19225 5' -62.2 NC_004684.1 + 42851 0.66 0.388335
Target:  5'- gCUAUCGcGGCCC-GGCaCACCGCCg- -3'
miRNA:   3'- aGGUGGC-CUGGGaCCGcGUGGUGGaa -5'
19225 5' -62.2 NC_004684.1 + 54120 0.66 0.379831
Target:  5'- gCCACCGGcggccaccagcGCgCUGGCGguCACgGCCUg -3'
miRNA:   3'- aGGUGGCC-----------UGgGACCGC--GUGgUGGAa -5'
19225 5' -62.2 NC_004684.1 + 20224 0.66 0.396963
Target:  5'- uUUCGCCuGGguGCgCCUGGCGCGCCGgUa- -3'
miRNA:   3'- -AGGUGG-CC--UG-GGACCGCGUGGUgGaa -5'
19225 5' -62.2 NC_004684.1 + 61713 0.66 0.379831
Target:  5'- --gGCCGGGCCCcGGC-CACCuCCg- -3'
miRNA:   3'- aggUGGCCUGGGaCCGcGUGGuGGaa -5'
19225 5' -62.2 NC_004684.1 + 57848 0.66 0.379831
Target:  5'- -gCACCGGcUCCaaccGGCGCACCAgCUc -3'
miRNA:   3'- agGUGGCCuGGGa---CCGCGUGGUgGAa -5'
19225 5' -62.2 NC_004684.1 + 59448 0.66 0.405714
Target:  5'- cCCACCGGuguGCgCCggucGGCGgcgaugucCACCACCUg -3'
miRNA:   3'- aGGUGGCC---UG-GGa---CCGC--------GUGGUGGAa -5'
19225 5' -62.2 NC_004684.1 + 47360 0.66 0.405714
Target:  5'- gCCACgguaGGACCCggcgguagUGGCGCugaGCCAgCCUUc -3'
miRNA:   3'- aGGUGg---CCUGGG--------ACCGCG---UGGU-GGAA- -5'
19225 5' -62.2 NC_004684.1 + 8601 0.66 0.374788
Target:  5'- aCCGCCGGGacaaCCUGGCcccacacugugcgcaGUgcaGCCACCg- -3'
miRNA:   3'- aGGUGGCCUg---GGACCG---------------CG---UGGUGGaa -5'
19225 5' -62.2 NC_004684.1 + 42635 0.66 0.396963
Target:  5'- gCCGCCGGugC-UGGUGCcGCCAgCg- -3'
miRNA:   3'- aGGUGGCCugGgACCGCG-UGGUgGaa -5'
19225 5' -62.2 NC_004684.1 + 53153 0.66 0.388335
Target:  5'- gUCCACCGGGUCC-GGCGUgaagGCCuCCg- -3'
miRNA:   3'- -AGGUGGCCUGGGaCCGCG----UGGuGGaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.