miRNA display CGI


Results 1 - 20 of 126 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19225 5' -62.2 NC_004684.1 + 45399 1.05 0.000457
Target:  5'- cUCCACCGGACCCUGGCGCACCACCUUg -3'
miRNA:   3'- -AGGUGGCCUGGGACCGCGUGGUGGAA- -5'
19225 5' -62.2 NC_004684.1 + 14560 0.79 0.047727
Target:  5'- aCCGCUGGACaCCUGGUGCGCCgggGCCa- -3'
miRNA:   3'- aGGUGGCCUG-GGACCGCGUGG---UGGaa -5'
19225 5' -62.2 NC_004684.1 + 45111 0.77 0.066521
Target:  5'- gCCGCgCGGGCCUUGGC-CGCCGCCa- -3'
miRNA:   3'- aGGUG-GCCUGGGACCGcGUGGUGGaa -5'
19225 5' -62.2 NC_004684.1 + 14814 0.74 0.111553
Target:  5'- gUCCACCGGACUgUGGgGCG-CGCCg- -3'
miRNA:   3'- -AGGUGGCCUGGgACCgCGUgGUGGaa -5'
19225 5' -62.2 NC_004684.1 + 61943 0.74 0.114279
Target:  5'- cCCGCCGGG-CCUGGUGCACCggauguaACCg- -3'
miRNA:   3'- aGGUGGCCUgGGACCGCGUGG-------UGGaa -5'
19225 5' -62.2 NC_004684.1 + 4411 0.73 0.134447
Target:  5'- gCCACCGG-CCacguGCGCACCACCg- -3'
miRNA:   3'- aGGUGGCCuGGgac-CGCGUGGUGGaa -5'
19225 5' -62.2 NC_004684.1 + 61459 0.73 0.141744
Target:  5'- gCCGCCGGugCUc-GCGUGCCACCUa -3'
miRNA:   3'- aGGUGGCCugGGacCGCGUGGUGGAa -5'
19225 5' -62.2 NC_004684.1 + 708 0.72 0.149402
Target:  5'- gCCGCCGGGugggaagaCCUGG-GCACCGCCg- -3'
miRNA:   3'- aGGUGGCCUg-------GGACCgCGUGGUGGaa -5'
19225 5' -62.2 NC_004684.1 + 10011 0.72 0.149402
Target:  5'- aCUGCCGGACCUgccGCGCGCCgACCg- -3'
miRNA:   3'- aGGUGGCCUGGGac-CGCGUGG-UGGaa -5'
19225 5' -62.2 NC_004684.1 + 11205 0.72 0.149402
Target:  5'- aUCCACCGGGCgCUcGauaGCGCCGCCg- -3'
miRNA:   3'- -AGGUGGCCUGgGAcCg--CGUGGUGGaa -5'
19225 5' -62.2 NC_004684.1 + 4907 0.72 0.161596
Target:  5'- gCCACCGG-CCUcGGCgGCACCAUCa- -3'
miRNA:   3'- aGGUGGCCuGGGaCCG-CGUGGUGGaa -5'
19225 5' -62.2 NC_004684.1 + 34235 0.72 0.170216
Target:  5'- aCCGCCGGGCCaacgGGCGgcaACUGCCUg -3'
miRNA:   3'- aGGUGGCCUGGga--CCGCg--UGGUGGAa -5'
19225 5' -62.2 NC_004684.1 + 56285 0.71 0.174679
Target:  5'- aUCCAaggcaucagcCCGG-CCCUGGCGCGCCGg--- -3'
miRNA:   3'- -AGGU----------GGCCuGGGACCGCGUGGUggaa -5'
19225 5' -62.2 NC_004684.1 + 54403 0.71 0.179245
Target:  5'- aUCCACCcGGCCC-GGCGCucgguguugccuGCCGCCg- -3'
miRNA:   3'- -AGGUGGcCUGGGaCCGCG------------UGGUGGaa -5'
19225 5' -62.2 NC_004684.1 + 26567 0.71 0.183918
Target:  5'- uUCCGgCGcGCCCUGGCGCGCgGCg-- -3'
miRNA:   3'- -AGGUgGCcUGGGACCGCGUGgUGgaa -5'
19225 5' -62.2 NC_004684.1 + 64255 0.71 0.183918
Target:  5'- -gCACCGuGACCCcGGCGUACgGCCc- -3'
miRNA:   3'- agGUGGC-CUGGGaCCGCGUGgUGGaa -5'
19225 5' -62.2 NC_004684.1 + 59482 0.71 0.193585
Target:  5'- cUCCACCGG-CUggCUGGCG-GCCACCa- -3'
miRNA:   3'- -AGGUGGCCuGG--GACCGCgUGGUGGaa -5'
19225 5' -62.2 NC_004684.1 + 62398 0.71 0.193585
Target:  5'- -gCACCGGGCCCUugcccucGCGCugCGCCc- -3'
miRNA:   3'- agGUGGCCUGGGAc------CGCGugGUGGaa -5'
19225 5' -62.2 NC_004684.1 + 48295 0.71 0.193585
Target:  5'- cCCACCGG-CCUUcGCGCACCAgCa- -3'
miRNA:   3'- aGGUGGCCuGGGAcCGCGUGGUgGaa -5'
19225 5' -62.2 NC_004684.1 + 52455 0.71 0.198079
Target:  5'- gCCACCGGgauGCCCgacggcaUGGC-CGCCACCa- -3'
miRNA:   3'- aGGUGGCC---UGGG-------ACCGcGUGGUGGaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.