miRNA display CGI


Results 1 - 20 of 126 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19225 5' -62.2 NC_004684.1 + 707 0.68 0.287813
Target:  5'- gCCGCCGGuggacGgCCUGGCGCuccaACUACCc- -3'
miRNA:   3'- aGGUGGCC-----UgGGACCGCG----UGGUGGaa -5'
19225 5' -62.2 NC_004684.1 + 708 0.72 0.149402
Target:  5'- gCCGCCGGGugggaagaCCUGG-GCACCGCCg- -3'
miRNA:   3'- aGGUGGCCUg-------GGACCgCGUGGUGGaa -5'
19225 5' -62.2 NC_004684.1 + 746 0.68 0.274297
Target:  5'- -aCACCGacGCCCUGGCGgcgcuccuggaCACCGCCg- -3'
miRNA:   3'- agGUGGCc-UGGGACCGC-----------GUGGUGGaa -5'
19225 5' -62.2 NC_004684.1 + 871 0.68 0.319376
Target:  5'- cCCGCCGGgccgcgcugaaggcgGCCCgcgaGGC-CGCCGCCa- -3'
miRNA:   3'- aGGUGGCC---------------UGGGa---CCGcGUGGUGGaa -5'
19225 5' -62.2 NC_004684.1 + 1572 0.67 0.33456
Target:  5'- gCCGCCGGugCCUccgggucaccugcccGGUGCACgGCa-- -3'
miRNA:   3'- aGGUGGCCugGGA---------------CCGCGUGgUGgaa -5'
19225 5' -62.2 NC_004684.1 + 1683 0.68 0.311981
Target:  5'- cCCACCaGGCCgagCUGGCGCGCaucgagcgcaagaagCGCCUg -3'
miRNA:   3'- aGGUGGcCUGG---GACCGCGUG---------------GUGGAa -5'
19225 5' -62.2 NC_004684.1 + 1928 0.67 0.347082
Target:  5'- cCUGCCGGGCCUgguaccGGCGCACggugGCCg- -3'
miRNA:   3'- aGGUGGCCUGGGa-----CCGCGUGg---UGGaa -5'
19225 5' -62.2 NC_004684.1 + 2450 0.66 0.405714
Target:  5'- gCCACC--GCCCgccaGGCGCucaccgccGCCACCUg -3'
miRNA:   3'- aGGUGGccUGGGa---CCGCG--------UGGUGGAa -5'
19225 5' -62.2 NC_004684.1 + 2524 0.67 0.331481
Target:  5'- gCgACCGGACaac-GCGCACCACCc- -3'
miRNA:   3'- aGgUGGCCUGggacCGCGUGGUGGaa -5'
19225 5' -62.2 NC_004684.1 + 2682 0.67 0.3632
Target:  5'- cCCGauGGagGCCCUGGCG-GCCGCCa- -3'
miRNA:   3'- aGGUggCC--UGGGACCGCgUGGUGGaa -5'
19225 5' -62.2 NC_004684.1 + 2856 0.69 0.254984
Target:  5'- aCCACgGGuuCCUGGuCGCGCCggacgACCUg -3'
miRNA:   3'- aGGUGgCCugGGACC-GCGUGG-----UGGAa -5'
19225 5' -62.2 NC_004684.1 + 2949 0.66 0.414585
Target:  5'- -gCACCGaGGCCaucGGCGCGCUGCUg- -3'
miRNA:   3'- agGUGGC-CUGGga-CCGCGUGGUGGaa -5'
19225 5' -62.2 NC_004684.1 + 2971 0.68 0.287813
Target:  5'- aCCAUCGGuGCCCUggacggcgggGGCGCACCuucgucACCa- -3'
miRNA:   3'- aGGUGGCC-UGGGA----------CCGCGUGG------UGGaa -5'
19225 5' -62.2 NC_004684.1 + 3408 0.67 0.323876
Target:  5'- aCCAaCGGcACCCUGGCaccGCugGCCGCCa- -3'
miRNA:   3'- aGGUgGCC-UGGGACCG---CG--UGGUGGaa -5'
19225 5' -62.2 NC_004684.1 + 3515 0.69 0.267733
Target:  5'- aCCGCUGGGCCCgaugaaGGC-CGCCACg-- -3'
miRNA:   3'- aGGUGGCCUGGGa-----CCGcGUGGUGgaa -5'
19225 5' -62.2 NC_004684.1 + 3615 0.67 0.355076
Target:  5'- gCCGCCGaacacgaguGGCCgaaGCGCGCCACCUg -3'
miRNA:   3'- aGGUGGC---------CUGGgacCGCGUGGUGGAa -5'
19225 5' -62.2 NC_004684.1 + 3653 0.68 0.306882
Target:  5'- gCCGcCCGGugCCgggucaucguacggUGGCccgGCACCGCCUc -3'
miRNA:   3'- aGGU-GGCCugGG--------------ACCG---CGUGGUGGAa -5'
19225 5' -62.2 NC_004684.1 + 4411 0.73 0.134447
Target:  5'- gCCACCGG-CCacguGCGCACCACCg- -3'
miRNA:   3'- aGGUGGCCuGGgac-CGCGUGGUGGaa -5'
19225 5' -62.2 NC_004684.1 + 4907 0.72 0.161596
Target:  5'- gCCACCGG-CCUcGGCgGCACCAUCa- -3'
miRNA:   3'- aGGUGGCCuGGGaCCG-CGUGGUGGaa -5'
19225 5' -62.2 NC_004684.1 + 5941 0.69 0.236214
Target:  5'- gCCACCGGGCgguccaaCCUGGCcGCGCCGgUg- -3'
miRNA:   3'- aGGUGGCCUG-------GGACCG-CGUGGUgGaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.