miRNA display CGI


Results 1 - 20 of 126 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19225 5' -62.2 NC_004684.1 + 10555 0.68 0.274297
Target:  5'- gUCgGCgGGgagGCCCUGGCGUuccCCGCCg- -3'
miRNA:   3'- -AGgUGgCC---UGGGACCGCGu--GGUGGaa -5'
19225 5' -62.2 NC_004684.1 + 16273 0.7 0.21426
Target:  5'- uUCgCGCCGGGCCCgacgcGGCGCuuCACUg- -3'
miRNA:   3'- -AG-GUGGCCUGGGa----CCGCGugGUGGaa -5'
19225 5' -62.2 NC_004684.1 + 5941 0.69 0.236214
Target:  5'- gCCACCGGGCgguccaaCCUGGCcGCGCCGgUg- -3'
miRNA:   3'- aGGUGGCCUG-------GGACCG-CGUGGUgGaa -5'
19225 5' -62.2 NC_004684.1 + 2856 0.69 0.254984
Target:  5'- aCCACgGGuuCCUGGuCGCGCCggacgACCUg -3'
miRNA:   3'- aGGUGgCCugGGACC-GCGUGG-----UGGAa -5'
19225 5' -62.2 NC_004684.1 + 22473 0.69 0.261295
Target:  5'- cUCCagGCCGGuuCCCUGGCaGCgGCCAaCCUg -3'
miRNA:   3'- -AGG--UGGCCu-GGGACCG-CG-UGGU-GGAa -5'
19225 5' -62.2 NC_004684.1 + 5991 0.69 0.261295
Target:  5'- gUCCcgGCCuGGCUCaGGCGCACCAUCg- -3'
miRNA:   3'- -AGG--UGGcCUGGGaCCGCGUGGUGGaa -5'
19225 5' -62.2 NC_004684.1 + 52091 0.68 0.273635
Target:  5'- gCCACCGGccacgucgaccagGCCCagcaGGUGCACCGCg-- -3'
miRNA:   3'- aGGUGGCC-------------UGGGa---CCGCGUGGUGgaa -5'
19225 5' -62.2 NC_004684.1 + 8438 0.68 0.273635
Target:  5'- cCCGCCGGGCcagggaaCCUGacuccccgguGCGCGCCAaCCUg -3'
miRNA:   3'- aGGUGGCCUG-------GGAC----------CGCGUGGU-GGAa -5'
19225 5' -62.2 NC_004684.1 + 746 0.68 0.274297
Target:  5'- -aCACCGacGCCCUGGCGgcgcuccuggaCACCGCCg- -3'
miRNA:   3'- agGUGGCc-UGGGACCGC-----------GUGGUGGaa -5'
19225 5' -62.2 NC_004684.1 + 52455 0.71 0.198079
Target:  5'- gCCACCGGgauGCCCgacggcaUGGC-CGCCACCa- -3'
miRNA:   3'- aGGUGGCC---UGGG-------ACCGcGUGGUGGaa -5'
19225 5' -62.2 NC_004684.1 + 62398 0.71 0.193585
Target:  5'- -gCACCGGGCCCUugcccucGCGCugCGCCc- -3'
miRNA:   3'- agGUGGCCUGGGAc------CGCGugGUGGaa -5'
19225 5' -62.2 NC_004684.1 + 48295 0.71 0.193585
Target:  5'- cCCACCGG-CCUUcGCGCACCAgCa- -3'
miRNA:   3'- aGGUGGCCuGGGAcCGCGUGGUgGaa -5'
19225 5' -62.2 NC_004684.1 + 14814 0.74 0.111553
Target:  5'- gUCCACCGGACUgUGGgGCG-CGCCg- -3'
miRNA:   3'- -AGGUGGCCUGGgACCgCGUgGUGGaa -5'
19225 5' -62.2 NC_004684.1 + 61943 0.74 0.114279
Target:  5'- cCCGCCGGG-CCUGGUGCACCggauguaACCg- -3'
miRNA:   3'- aGGUGGCCUgGGACCGCGUGG-------UGGaa -5'
19225 5' -62.2 NC_004684.1 + 61459 0.73 0.141744
Target:  5'- gCCGCCGGugCUc-GCGUGCCACCUa -3'
miRNA:   3'- aGGUGGCCugGGacCGCGUGGUGGAa -5'
19225 5' -62.2 NC_004684.1 + 10011 0.72 0.149402
Target:  5'- aCUGCCGGACCUgccGCGCGCCgACCg- -3'
miRNA:   3'- aGGUGGCCUGGGac-CGCGUGG-UGGaa -5'
19225 5' -62.2 NC_004684.1 + 4907 0.72 0.161596
Target:  5'- gCCACCGG-CCUcGGCgGCACCAUCa- -3'
miRNA:   3'- aGGUGGCCuGGGaCCG-CGUGGUGGaa -5'
19225 5' -62.2 NC_004684.1 + 34235 0.72 0.170216
Target:  5'- aCCGCCGGGCCaacgGGCGgcaACUGCCUg -3'
miRNA:   3'- aGGUGGCCUGGga--CCGCg--UGGUGGAa -5'
19225 5' -62.2 NC_004684.1 + 56285 0.71 0.174679
Target:  5'- aUCCAaggcaucagcCCGG-CCCUGGCGCGCCGg--- -3'
miRNA:   3'- -AGGU----------GGCCuGGGACCGCGUGGUggaa -5'
19225 5' -62.2 NC_004684.1 + 26567 0.71 0.183918
Target:  5'- uUCCGgCGcGCCCUGGCGCGCgGCg-- -3'
miRNA:   3'- -AGGUgGCcUGGGACCGCGUGgUGgaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.