miRNA display CGI


Results 1 - 20 of 273 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19230 3' -59.7 NC_004684.1 + 59458 0.65 0.601887
Target:  5'- uGCGCCGGuCgGCGGCGaUGuccaccaccugcgcGGCcagCGGCCc -3'
miRNA:   3'- -CGUGGCU-GgUGCCGC-AC--------------CUGa--GCCGG- -5'
19230 3' -59.7 NC_004684.1 + 24590 0.65 0.603958
Target:  5'- aGCACguccugaCGACaGCGGaCGUGGcGCgcaugggCGGCCa -3'
miRNA:   3'- -CGUG-------GCUGgUGCC-GCACC-UGa------GCCGG- -5'
19230 3' -59.7 NC_004684.1 + 18073 0.66 0.574038
Target:  5'- gGUGCCGACCACGGacucGAucuuCUCGGUg -3'
miRNA:   3'- -CGUGGCUGGUGCCgcacCU----GAGCCGg -5'
19230 3' -59.7 NC_004684.1 + 46336 0.66 0.563796
Target:  5'- -gGCUGGCgaaCACGaugggaGCGUGGuggucgucguGCUCGGCCa -3'
miRNA:   3'- cgUGGCUG---GUGC------CGCACC----------UGAGCCGG- -5'
19230 3' -59.7 NC_004684.1 + 37640 0.66 0.563796
Target:  5'- uGCGCUGGCCAUGGCc---GCcCGGUCa -3'
miRNA:   3'- -CGUGGCUGGUGCCGcaccUGaGCCGG- -5'
19230 3' -59.7 NC_004684.1 + 43890 0.66 0.563796
Target:  5'- cGCAUCG--CugGGCagGUGGAUgacaCGGCCa -3'
miRNA:   3'- -CGUGGCugGugCCG--CACCUGa---GCCGG- -5'
19230 3' -59.7 NC_004684.1 + 21067 0.66 0.563796
Target:  5'- gGUGCUGACCG-GGCaccUGGGC-CGGUCa -3'
miRNA:   3'- -CGUGGCUGGUgCCGc--ACCUGaGCCGG- -5'
19230 3' -59.7 NC_004684.1 + 44238 0.66 0.563796
Target:  5'- gGCACCugcuccagcguGACCAUGGCGcagucGACggCGGCa -3'
miRNA:   3'- -CGUGG-----------CUGGUGCCGCac---CUGa-GCCGg -5'
19230 3' -59.7 NC_004684.1 + 25836 0.66 0.553602
Target:  5'- gGCAUCGgcgGCCAgaugcuCGGCGgccuguucaacGGcCUCGGCCa -3'
miRNA:   3'- -CGUGGC---UGGU------GCCGCa----------CCuGAGCCGG- -5'
19230 3' -59.7 NC_004684.1 + 18467 0.66 0.563796
Target:  5'- gGCACCGAgCugGuGCuGUcGGugUcCGGCa -3'
miRNA:   3'- -CGUGGCUgGugC-CG-CA-CCugA-GCCGg -5'
19230 3' -59.7 NC_004684.1 + 2392 0.66 0.574038
Target:  5'- uCGCCGGgUGCGGCGUGcACgucgUGGCa -3'
miRNA:   3'- cGUGGCUgGUGCCGCACcUGa---GCCGg -5'
19230 3' -59.7 NC_004684.1 + 45699 0.66 0.563796
Target:  5'- -aGCCauGACCACGGUGUcgcacaucgGGAagUCGGCa -3'
miRNA:   3'- cgUGG--CUGGUGCCGCA---------CCUg-AGCCGg -5'
19230 3' -59.7 NC_004684.1 + 51065 0.66 0.553602
Target:  5'- uGCGCCcgugGGugAUGGCGaUGGACUCgaccuuGGCCa -3'
miRNA:   3'- -CGUGG----CUggUGCCGC-ACCUGAG------CCGG- -5'
19230 3' -59.7 NC_004684.1 + 34869 0.66 0.563796
Target:  5'- cGCGuuGugCGCGaCGUgaaGGcCUUGGCCa -3'
miRNA:   3'- -CGUggCugGUGCcGCA---CCuGAGCCGG- -5'
19230 3' -59.7 NC_004684.1 + 30964 0.66 0.553602
Target:  5'- cGCugUGGa-ACGGCGUGG--UCGGCa -3'
miRNA:   3'- -CGugGCUggUGCCGCACCugAGCCGg -5'
19230 3' -59.7 NC_004684.1 + 46923 0.66 0.583293
Target:  5'- aGgACCGGCCaacgGCGGUGUGGGugacccgUUCGGg- -3'
miRNA:   3'- -CgUGGCUGG----UGCCGCACCU-------GAGCCgg -5'
19230 3' -59.7 NC_004684.1 + 34236 0.66 0.553602
Target:  5'- cCGCCgGGCCaacggGCGGCaacugccuGUGGACUgcgcaGGCCa -3'
miRNA:   3'- cGUGG-CUGG-----UGCCG--------CACCUGAg----CCGG- -5'
19230 3' -59.7 NC_004684.1 + 60205 0.66 0.563796
Target:  5'- uGUGCUGAU--CGGCGuUGGcCUCGGCg -3'
miRNA:   3'- -CGUGGCUGguGCCGC-ACCuGAGCCGg -5'
19230 3' -59.7 NC_004684.1 + 13641 0.66 0.563796
Target:  5'- uCGCCG-CCGCGcaccuGCGUGGugUCucguGGCg -3'
miRNA:   3'- cGUGGCuGGUGC-----CGCACCugAG----CCGg -5'
19230 3' -59.7 NC_004684.1 + 42175 0.66 0.574038
Target:  5'- aGCGCCGcACUgcGCGGUgagcagugggccGUGGAgCUggUGGCCg -3'
miRNA:   3'- -CGUGGC-UGG--UGCCG------------CACCU-GA--GCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.