miRNA display CGI


Results 1 - 20 of 273 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19230 3' -59.7 NC_004684.1 + 330 0.66 0.583293
Target:  5'- cGCACCGGgUACGGCGcgaagcgUGcGcagcaGCUCGGUg -3'
miRNA:   3'- -CGUGGCUgGUGCCGC-------AC-C-----UGAGCCGg -5'
19230 3' -59.7 NC_004684.1 + 509 0.67 0.533387
Target:  5'- cGCGCCGaaggucGCCAcCGGCGcuGACgugcUGGCCa -3'
miRNA:   3'- -CGUGGC------UGGU-GCCGCacCUGa---GCCGG- -5'
19230 3' -59.7 NC_004684.1 + 1020 0.67 0.523378
Target:  5'- cCACCGcgcaGCuCGCGGCGUGG----GGCCa -3'
miRNA:   3'- cGUGGC----UG-GUGCCGCACCugagCCGG- -5'
19230 3' -59.7 NC_004684.1 + 1056 0.68 0.455627
Target:  5'- gGCACCGGuugugcuggcUgGCGGCGcUGGACgugaUCGGUg -3'
miRNA:   3'- -CGUGGCU----------GgUGCCGC-ACCUG----AGCCGg -5'
19230 3' -59.7 NC_004684.1 + 1175 0.73 0.235188
Target:  5'- gGUGCCGAgCCGCaGGCGcUGGACUacuaCGGCa -3'
miRNA:   3'- -CGUGGCU-GGUG-CCGC-ACCUGA----GCCGg -5'
19230 3' -59.7 NC_004684.1 + 1999 0.69 0.384397
Target:  5'- -uGCUGGCCugGGCGcUGGAC-C-GCCc -3'
miRNA:   3'- cgUGGCUGGugCCGC-ACCUGaGcCGG- -5'
19230 3' -59.7 NC_004684.1 + 2026 0.7 0.343006
Target:  5'- aCGuuGACCA-GGCcagcgcccuguucGUGGACUaCGGCCa -3'
miRNA:   3'- cGUggCUGGUgCCG-------------CACCUGA-GCCGG- -5'
19230 3' -59.7 NC_004684.1 + 2392 0.66 0.574038
Target:  5'- uCGCCGGgUGCGGCGUGcACgucgUGGCa -3'
miRNA:   3'- cGUGGCUgGUGCCGCACcUGa---GCCGg -5'
19230 3' -59.7 NC_004684.1 + 2449 0.69 0.392892
Target:  5'- uCGCCcGCCugGGCGgccaGCUCGGCg -3'
miRNA:   3'- cGUGGcUGGugCCGCacc-UGAGCCGg -5'
19230 3' -59.7 NC_004684.1 + 2599 0.67 0.523378
Target:  5'- aGCACCa---ACGGCGUGGucaGCUUcGCCg -3'
miRNA:   3'- -CGUGGcuggUGCCGCACC---UGAGcCGG- -5'
19230 3' -59.7 NC_004684.1 + 3579 0.67 0.503583
Target:  5'- cGCACCaucaccagcACCACGGuCGcGGACacgaaGGCCa -3'
miRNA:   3'- -CGUGGc--------UGGUGCC-GCaCCUGag---CCGG- -5'
19230 3' -59.7 NC_004684.1 + 4012 0.69 0.384397
Target:  5'- aCGCCG-CCAuCGGC-UGGcGCgUCGGCCg -3'
miRNA:   3'- cGUGGCuGGU-GCCGcACC-UG-AGCCGG- -5'
19230 3' -59.7 NC_004684.1 + 4031 0.66 0.553602
Target:  5'- uCACCGG-CAUGGCGacggUGGcCUacCGGCCa -3'
miRNA:   3'- cGUGGCUgGUGCCGC----ACCuGA--GCCGG- -5'
19230 3' -59.7 NC_004684.1 + 4144 0.67 0.503583
Target:  5'- cGCAUCGG-CGCGGacacCGUGGACgcgaucaUGGCCc -3'
miRNA:   3'- -CGUGGCUgGUGCC----GCACCUGa------GCCGG- -5'
19230 3' -59.7 NC_004684.1 + 4232 0.68 0.437141
Target:  5'- uGCGCCug-CGCGGCGcgcaGGAgccgcaCUCGGCCa -3'
miRNA:   3'- -CGUGGcugGUGCCGCa---CCU------GAGCCGG- -5'
19230 3' -59.7 NC_004684.1 + 4481 0.68 0.440804
Target:  5'- uCACCGGCCAgGGCcUGGcccgccguggcaacgGCaUGGCCg -3'
miRNA:   3'- cGUGGCUGGUgCCGcACC---------------UGaGCCGG- -5'
19230 3' -59.7 NC_004684.1 + 4806 0.7 0.376025
Target:  5'- -gGCCGACCGCaacggcaaGGUGUcGAUUCcGGCCg -3'
miRNA:   3'- cgUGGCUGGUG--------CCGCAcCUGAG-CCGG- -5'
19230 3' -59.7 NC_004684.1 + 5454 0.69 0.384397
Target:  5'- uGCACCaGGCC-CGGCG-GGuGCcgUGGCCc -3'
miRNA:   3'- -CGUGG-CUGGuGCCGCaCC-UGa-GCCGG- -5'
19230 3' -59.7 NC_004684.1 + 5934 0.68 0.474525
Target:  5'- cGCGCUGGCCACcgGGCGguccaACcUGGCCg -3'
miRNA:   3'- -CGUGGCUGGUG--CCGCacc--UGaGCCGG- -5'
19230 3' -59.7 NC_004684.1 + 6420 0.69 0.384397
Target:  5'- aGC-UCGGCgGCGGCGUGaacgccuucgcGCUUGGCCg -3'
miRNA:   3'- -CGuGGCUGgUGCCGCACc----------UGAGCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.