miRNA display CGI


Results 1 - 20 of 273 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19230 3' -59.7 NC_004684.1 + 36780 0.73 0.24701
Target:  5'- gGUGCCGACgCugguCGGCG-GcGGCUCGGUCa -3'
miRNA:   3'- -CGUGGCUG-Gu---GCCGCaC-CUGAGCCGG- -5'
19230 3' -59.7 NC_004684.1 + 58383 0.74 0.197509
Target:  5'- cGCACgGcACCGC-GCGUGGAggcCUUGGCCc -3'
miRNA:   3'- -CGUGgC-UGGUGcCGCACCU---GAGCCGG- -5'
19230 3' -59.7 NC_004684.1 + 33835 0.73 0.216722
Target:  5'- uGC-CCGGCgGCGGCGgcaacgGGGCcaaccaaggaucguUCGGCCu -3'
miRNA:   3'- -CGuGGCUGgUGCCGCa-----CCUG--------------AGCCGG- -5'
19230 3' -59.7 NC_004684.1 + 63526 0.73 0.218348
Target:  5'- gGCGUCGcaGCuCGCgGGCGUGGcGCUCGGCCu -3'
miRNA:   3'- -CGUGGC--UG-GUG-CCGCACC-UGAGCCGG- -5'
19230 3' -59.7 NC_004684.1 + 49183 0.73 0.218348
Target:  5'- gGCGgCGGCgGCGGCGgcGGccuGCUCGGUCg -3'
miRNA:   3'- -CGUgGCUGgUGCCGCa-CC---UGAGCCGG- -5'
19230 3' -59.7 NC_004684.1 + 56755 0.73 0.235188
Target:  5'- gGCACCaGACCACGGUGgugacGACgccgaCGGCUg -3'
miRNA:   3'- -CGUGG-CUGGUGCCGCac---CUGa----GCCGG- -5'
19230 3' -59.7 NC_004684.1 + 1175 0.73 0.235188
Target:  5'- gGUGCCGAgCCGCaGGCGcUGGACUacuaCGGCa -3'
miRNA:   3'- -CGUGGCU-GGUG-CCGC-ACCUGA----GCCGg -5'
19230 3' -59.7 NC_004684.1 + 40138 0.73 0.24701
Target:  5'- gGCACCGACCuCGGCGauccuguucaGGA--CGGCCu -3'
miRNA:   3'- -CGUGGCUGGuGCCGCa---------CCUgaGCCGG- -5'
19230 3' -59.7 NC_004684.1 + 53002 0.73 0.24701
Target:  5'- cCugCGGCgACGGCccGGugUCGGUCa -3'
miRNA:   3'- cGugGCUGgUGCCGcaCCugAGCCGG- -5'
19230 3' -59.7 NC_004684.1 + 32810 0.74 0.193065
Target:  5'- uGCACCGugUgcaGCGGCGUGGAUgguucccagguguugUGGCUc -3'
miRNA:   3'- -CGUGGCugG---UGCCGCACCUGa--------------GCCGG- -5'
19230 3' -59.7 NC_004684.1 + 22171 0.74 0.193065
Target:  5'- aGCACCGcaggGCCACGGCGgcggcgaccgccuucGGACUggcgcaggUGGCCu -3'
miRNA:   3'- -CGUGGC----UGGUGCCGCa--------------CCUGA--------GCCGG- -5'
19230 3' -59.7 NC_004684.1 + 60917 0.74 0.192577
Target:  5'- --cUCGGCCACGGCGUcgcacGcCUCGGCCa -3'
miRNA:   3'- cguGGCUGGUGCCGCAc----CuGAGCCGG- -5'
19230 3' -59.7 NC_004684.1 + 59614 0.81 0.063074
Target:  5'- cGCACCaaugcucGACCACGGUG-GGGgUCGGCCc -3'
miRNA:   3'- -CGUGG-------CUGGUGCCGCaCCUgAGCCGG- -5'
19230 3' -59.7 NC_004684.1 + 30910 0.81 0.063246
Target:  5'- aCACCGACCGgcaugccgcaGGCGUGGACUUGGaCCu -3'
miRNA:   3'- cGUGGCUGGUg---------CCGCACCUGAGCC-GG- -5'
19230 3' -59.7 NC_004684.1 + 27067 0.78 0.108569
Target:  5'- aGCGCCGGguCCGCaGGCGUGGACaUCGccGCCc -3'
miRNA:   3'- -CGUGGCU--GGUG-CCGCACCUG-AGC--CGG- -5'
19230 3' -59.7 NC_004684.1 + 64024 0.77 0.127285
Target:  5'- cGCGCuUGACCuCGGUGUcggcGGugUCGGCCu -3'
miRNA:   3'- -CGUG-GCUGGuGCCGCA----CCugAGCCGG- -5'
19230 3' -59.7 NC_004684.1 + 43618 0.76 0.137726
Target:  5'- aGC-CCGGCCACGGUGUGGcCgagcgCGGUg -3'
miRNA:   3'- -CGuGGCUGGUGCCGCACCuGa----GCCGg -5'
19230 3' -59.7 NC_004684.1 + 64207 0.76 0.146639
Target:  5'- uGUGCCGGaucgacaccugggaCACGGCGuUGGcCUCGGCCa -3'
miRNA:   3'- -CGUGGCUg-------------GUGCCGC-ACCuGAGCCGG- -5'
19230 3' -59.7 NC_004684.1 + 67067 0.76 0.148949
Target:  5'- cGCGCCGuACC-CGGUGcGGGCgUUGGCCu -3'
miRNA:   3'- -CGUGGC-UGGuGCCGCaCCUG-AGCCGG- -5'
19230 3' -59.7 NC_004684.1 + 51957 0.75 0.183037
Target:  5'- aGCACCGGCuccagcagCAgGGUGgccacGGugUCGGCCa -3'
miRNA:   3'- -CGUGGCUG--------GUgCCGCa----CCugAGCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.