miRNA display CGI


Results 1 - 20 of 273 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19230 3' -59.7 NC_004684.1 + 49652 1.12 0.000362
Target:  5'- aGCACCGACCACGGCGUGGACUCGGCCc -3'
miRNA:   3'- -CGUGGCUGGUGCCGCACCUGAGCCGG- -5'
19230 3' -59.7 NC_004684.1 + 59614 0.81 0.063074
Target:  5'- cGCACCaaugcucGACCACGGUG-GGGgUCGGCCc -3'
miRNA:   3'- -CGUGG-------CUGGUGCCGCaCCUgAGCCGG- -5'
19230 3' -59.7 NC_004684.1 + 30910 0.81 0.063246
Target:  5'- aCACCGACCGgcaugccgcaGGCGUGGACUUGGaCCu -3'
miRNA:   3'- cGUGGCUGGUg---------CCGCACCUGAGCC-GG- -5'
19230 3' -59.7 NC_004684.1 + 6806 0.8 0.076528
Target:  5'- cGCACCGugCGCGGCGUGGagacauaccaGCU-GGUCg -3'
miRNA:   3'- -CGUGGCugGUGCCGCACC----------UGAgCCGG- -5'
19230 3' -59.7 NC_004684.1 + 61323 0.78 0.10828
Target:  5'- gGCAUCGGCUaccagcGCGGCGUGGuuggucaGCUgGGCCg -3'
miRNA:   3'- -CGUGGCUGG------UGCCGCACC-------UGAgCCGG- -5'
19230 3' -59.7 NC_004684.1 + 27067 0.78 0.108569
Target:  5'- aGCGCCGGguCCGCaGGCGUGGACaUCGccGCCc -3'
miRNA:   3'- -CGUGGCU--GGUG-CCGCACCUG-AGC--CGG- -5'
19230 3' -59.7 NC_004684.1 + 18063 0.78 0.109732
Target:  5'- aGCGCCGACCAUGGcCGccgacgggucgauccUGGACggcaaGGCCa -3'
miRNA:   3'- -CGUGGCUGGUGCC-GC---------------ACCUGag---CCGG- -5'
19230 3' -59.7 NC_004684.1 + 64024 0.77 0.127285
Target:  5'- cGCGCuUGACCuCGGUGUcggcGGugUCGGCCu -3'
miRNA:   3'- -CGUG-GCUGGuGCCGCA----CCugAGCCGG- -5'
19230 3' -59.7 NC_004684.1 + 43618 0.76 0.137726
Target:  5'- aGC-CCGGCCACGGUGUGGcCgagcgCGGUg -3'
miRNA:   3'- -CGuGGCUGGUGCCGCACCuGa----GCCGg -5'
19230 3' -59.7 NC_004684.1 + 54525 0.76 0.137726
Target:  5'- gGCGgCGGCCuCGGCGguggcGGcCUCGGCCu -3'
miRNA:   3'- -CGUgGCUGGuGCCGCa----CCuGAGCCGG- -5'
19230 3' -59.7 NC_004684.1 + 64207 0.76 0.146639
Target:  5'- uGUGCCGGaucgacaccugggaCACGGCGuUGGcCUCGGCCa -3'
miRNA:   3'- -CGUGGCUg-------------GUGCCGC-ACCuGAGCCGG- -5'
19230 3' -59.7 NC_004684.1 + 67067 0.76 0.148949
Target:  5'- cGCGCCGuACC-CGGUGcGGGCgUUGGCCu -3'
miRNA:   3'- -CGUGGC-UGGuGCCGCaCCUG-AGCCGG- -5'
19230 3' -59.7 NC_004684.1 + 54642 0.76 0.152871
Target:  5'- cGCGCgGGCCAagagGGCGUcGAcCUCGGCCu -3'
miRNA:   3'- -CGUGgCUGGUg---CCGCAcCU-GAGCCGG- -5'
19230 3' -59.7 NC_004684.1 + 48064 0.75 0.165205
Target:  5'- cCGCuCGGCCACGGCG-GcGGCguaugCGGCCu -3'
miRNA:   3'- cGUG-GCUGGUGCCGCaC-CUGa----GCCGG- -5'
19230 3' -59.7 NC_004684.1 + 45102 0.75 0.169511
Target:  5'- gGCACCG-CCGCcGCGcGGGcCUUGGCCg -3'
miRNA:   3'- -CGUGGCuGGUGcCGCaCCU-GAGCCGG- -5'
19230 3' -59.7 NC_004684.1 + 41863 0.75 0.175708
Target:  5'- aGCACCGACC-CGGCGUcGGcggucgagaacagccGCUC-GCCg -3'
miRNA:   3'- -CGUGGCUGGuGCCGCA-CC---------------UGAGcCGG- -5'
19230 3' -59.7 NC_004684.1 + 42965 0.75 0.181643
Target:  5'- aGCACgaaggcgucgacuuCGGCCugGGCcuucuUGGugUCGGCCu -3'
miRNA:   3'- -CGUG--------------GCUGGugCCGc----ACCugAGCCGG- -5'
19230 3' -59.7 NC_004684.1 + 51957 0.75 0.183037
Target:  5'- aGCACCGGCuccagcagCAgGGUGgccacGGugUCGGCCa -3'
miRNA:   3'- -CGUGGCUG--------GUgCCGCa----CCugAGCCGG- -5'
19230 3' -59.7 NC_004684.1 + 24868 0.74 0.18967
Target:  5'- aCGCCGACCACGGCGgUGaGCgcgccguugaucgcgUUGGCCu -3'
miRNA:   3'- cGUGGCUGGUGCCGC-ACcUG---------------AGCCGG- -5'
19230 3' -59.7 NC_004684.1 + 60917 0.74 0.192577
Target:  5'- --cUCGGCCACGGCGUcgcacGcCUCGGCCa -3'
miRNA:   3'- cguGGCUGGUGCCGCAc----CuGAGCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.