miRNA display CGI


Results 1 - 20 of 278 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19231 5' -63.3 NC_004684.1 + 746 0.66 0.401866
Target:  5'- aCACCgACGcCCuGGCGGC--GCUCCUg -3'
miRNA:   3'- gGUGG-UGCuGGuCCGCCGacCGGGGG- -5'
19231 5' -63.3 NC_004684.1 + 40547 0.66 0.401866
Target:  5'- aCCuCCGCGACCuccAGGagcugGGCgaaGCCCUCg -3'
miRNA:   3'- -GGuGGUGCUGG---UCCg----CCGac-CGGGGG- -5'
19231 5' -63.3 NC_004684.1 + 29218 0.66 0.368685
Target:  5'- aCgGCaACGGCCAGGacaugcugUGGCgcGGCCCCa -3'
miRNA:   3'- -GgUGgUGCUGGUCC--------GCCGa-CCGGGGg -5'
19231 5' -63.3 NC_004684.1 + 50649 0.66 0.36788
Target:  5'- aCACCGCcgucgggggugcgGACCAGGCGuGCgcccGGUgCCg -3'
miRNA:   3'- gGUGGUG-------------CUGGUCCGC-CGa---CCGgGGg -5'
19231 5' -63.3 NC_004684.1 + 11603 0.66 0.376802
Target:  5'- gCGCCugGACgAcGGCaccgaGCUGGCCgUCg -3'
miRNA:   3'- gGUGGugCUGgU-CCGc----CGACCGGgGG- -5'
19231 5' -63.3 NC_004684.1 + 64655 0.66 0.419153
Target:  5'- aCGCCGaacguguggcCGugCGGuGUGGCgcacuuGCCCCCg -3'
miRNA:   3'- gGUGGU----------GCugGUC-CGCCGac----CGGGGG- -5'
19231 5' -63.3 NC_004684.1 + 28570 0.66 0.385039
Target:  5'- cCCGCCACcgguGugC-GGCGGCUG-CCUgCCg -3'
miRNA:   3'- -GGUGGUG----CugGuCCGCCGACcGGG-GG- -5'
19231 5' -63.3 NC_004684.1 + 1230 0.66 0.393394
Target:  5'- gCCuCgGCGGCCuGGuCGGUcgcccGGCCCCg -3'
miRNA:   3'- -GGuGgUGCUGGuCC-GCCGa----CCGGGGg -5'
19231 5' -63.3 NC_004684.1 + 29331 0.66 0.368685
Target:  5'- aCGCCGCuGACCaagcgcugggAGGCGGUggaccuguccGUCCCCg -3'
miRNA:   3'- gGUGGUG-CUGG----------UCCGCCGac--------CGGGGG- -5'
19231 5' -63.3 NC_004684.1 + 53936 0.66 0.385039
Target:  5'- gUCACCGuguCGGCCAGGCacaGCUGaGCaCCgCa -3'
miRNA:   3'- -GGUGGU---GCUGGUCCGc--CGAC-CG-GGgG- -5'
19231 5' -63.3 NC_004684.1 + 4800 0.66 0.374355
Target:  5'- aCGCCAUGACCGGcGCGcagaucgaggacaaGCUcGGCCUg- -3'
miRNA:   3'- gGUGGUGCUGGUC-CGC--------------CGA-CCGGGgg -5'
19231 5' -63.3 NC_004684.1 + 32811 0.66 0.393394
Target:  5'- gCACCGUGugCA-GCGGCguggaUGGUUCCCa -3'
miRNA:   3'- gGUGGUGCugGUcCGCCG-----ACCGGGGG- -5'
19231 5' -63.3 NC_004684.1 + 35442 0.66 0.385039
Target:  5'- cCCGCCggacagcggGCGACCGuuGCGGCcgGGCCgCg -3'
miRNA:   3'- -GGUGG---------UGCUGGUc-CGCCGa-CCGGgGg -5'
19231 5' -63.3 NC_004684.1 + 65457 0.66 0.368685
Target:  5'- gCCACCguGCGccgguACCAGGCccGGCaGGCCgggUCCg -3'
miRNA:   3'- -GGUGG--UGC-----UGGUCCG--CCGaCCGG---GGG- -5'
19231 5' -63.3 NC_004684.1 + 15063 0.66 0.368685
Target:  5'- aCGCCggaugaggucgACGGCCuuaucGGCGcGgUGGCCgCCCu -3'
miRNA:   3'- gGUGG-----------UGCUGGu----CCGC-CgACCGG-GGG- -5'
19231 5' -63.3 NC_004684.1 + 23204 0.66 0.385039
Target:  5'- aUCACCAaGGCCGccGGUGGCgacggcgGGUUCCUg -3'
miRNA:   3'- -GGUGGUgCUGGU--CCGCCGa------CCGGGGG- -5'
19231 5' -63.3 NC_004684.1 + 15809 0.66 0.36788
Target:  5'- aCCACCacgccgaGCGACCcGGUGGCgcgcGGCaUCgCCa -3'
miRNA:   3'- -GGUGG-------UGCUGGuCCGCCGa---CCG-GG-GG- -5'
19231 5' -63.3 NC_004684.1 + 32933 0.66 0.401014
Target:  5'- -aGCCAUGACCcuugaggcacuccAGGCGcucgcGCUGGCCaaCCu -3'
miRNA:   3'- ggUGGUGCUGG-------------UCCGC-----CGACCGGg-GG- -5'
19231 5' -63.3 NC_004684.1 + 23044 0.66 0.393394
Target:  5'- aCGCCuuggugACGGCCuGGCcaaGCUGGCCaaCCg -3'
miRNA:   3'- gGUGG------UGCUGGuCCGc--CGACCGGg-GG- -5'
19231 5' -63.3 NC_004684.1 + 47908 0.66 0.368685
Target:  5'- -gGCCACGGUC-GGCGGCcucGGCCaCCUu -3'
miRNA:   3'- ggUGGUGCUGGuCCGCCGa--CCGG-GGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.