Results 1 - 20 of 278 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
19231 | 5' | -63.3 | NC_004684.1 | + | 65964 | 0.73 | 0.126872 |
Target: 5'- uCgGCCugGACCuuGGCccGGCaGGCCUCCa -3' miRNA: 3'- -GgUGGugCUGGu-CCG--CCGaCCGGGGG- -5' |
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19231 | 5' | -63.3 | NC_004684.1 | + | 57245 | 0.75 | 0.097692 |
Target: 5'- cCCACCugGG-CGGGCGGCaccgucGGCCCgCa -3' miRNA: 3'- -GGUGGugCUgGUCCGCCGa-----CCGGGgG- -5' |
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19231 | 5' | -63.3 | NC_004684.1 | + | 24913 | 0.75 | 0.105707 |
Target: 5'- gCCGCCGCGAUCA-GCGcGCUGGgcggcgaCCCCg -3' miRNA: 3'- -GGUGGUGCUGGUcCGC-CGACCg------GGGG- -5' |
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19231 | 5' | -63.3 | NC_004684.1 | + | 23670 | 0.74 | 0.10823 |
Target: 5'- aCACCgACGGCCuGGuCGGCccggaccagagcgUGGCCUCCa -3' miRNA: 3'- gGUGG-UGCUGGuCC-GCCG-------------ACCGGGGG- -5' |
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19231 | 5' | -63.3 | NC_004684.1 | + | 1515 | 0.74 | 0.108514 |
Target: 5'- aCCACUACGGcgucaaccccuCCgAGGUGGCcaccagcGGCCCCCa -3' miRNA: 3'- -GGUGGUGCU-----------GG-UCCGCCGa------CCGGGGG- -5' |
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19231 | 5' | -63.3 | NC_004684.1 | + | 39745 | 0.74 | 0.111391 |
Target: 5'- uCCACCGuggucaugaGACCGGGUGGCaUGGCgUCCu -3' miRNA: 3'- -GGUGGUg--------CUGGUCCGCCG-ACCGgGGG- -5' |
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19231 | 5' | -63.3 | NC_004684.1 | + | 25293 | 0.74 | 0.117359 |
Target: 5'- cCgGCCAC-ACCAGGCGGCggcgguucgucGGCCCUg -3' miRNA: 3'- -GgUGGUGcUGGUCCGCCGa----------CCGGGGg -5' |
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19231 | 5' | -63.3 | NC_004684.1 | + | 12071 | 0.74 | 0.117359 |
Target: 5'- gCCGCCgagcGCGACgAGGU-GCUGGCCCgCg -3' miRNA: 3'- -GGUGG----UGCUGgUCCGcCGACCGGGgG- -5' |
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19231 | 5' | -63.3 | NC_004684.1 | + | 41331 | 0.73 | 0.126872 |
Target: 5'- gCACCGCGACCGccgacGGCcgGGCcaaGGCCaCCCg -3' miRNA: 3'- gGUGGUGCUGGU-----CCG--CCGa--CCGG-GGG- -5' |
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19231 | 5' | -63.3 | NC_004684.1 | + | 40631 | 0.75 | 0.09515 |
Target: 5'- aCCGCCgcGCGGCCGacgaacuuGGgGGcCUGGCCCCg -3' miRNA: 3'- -GGUGG--UGCUGGU--------CCgCC-GACCGGGGg -5' |
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19231 | 5' | -63.3 | NC_004684.1 | + | 19449 | 0.75 | 0.090253 |
Target: 5'- gCGcCCAUGcCCGGGCGGCggUGGCCCgCg -3' miRNA: 3'- gGU-GGUGCuGGUCCGCCG--ACCGGGgG- -5' |
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19231 | 5' | -63.3 | NC_004684.1 | + | 59861 | 0.75 | 0.090014 |
Target: 5'- gCCACgGCGGCCAGGuCGGUccgGGCagguccaCCCCg -3' miRNA: 3'- -GGUGgUGCUGGUCC-GCCGa--CCG-------GGGG- -5' |
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19231 | 5' | -63.3 | NC_004684.1 | + | 39329 | 0.82 | 0.030695 |
Target: 5'- -uGCCGCGcCCAGGcCGGUUGGCCgCCCa -3' miRNA: 3'- ggUGGUGCuGGUCC-GCCGACCGG-GGG- -5' |
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19231 | 5' | -63.3 | NC_004684.1 | + | 65321 | 0.81 | 0.03368 |
Target: 5'- gCACCACGGCCAGcGCcaggcaggccacgauGGC-GGCCCCCa -3' miRNA: 3'- gGUGGUGCUGGUC-CG---------------CCGaCCGGGGG- -5' |
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19231 | 5' | -63.3 | NC_004684.1 | + | 59754 | 0.8 | 0.043732 |
Target: 5'- gUCACCACGcccGCCAcGGCGaGCUGGCUCUCg -3' miRNA: 3'- -GGUGGUGC---UGGU-CCGC-CGACCGGGGG- -5' |
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19231 | 5' | -63.3 | NC_004684.1 | + | 50328 | 0.8 | 0.043732 |
Target: 5'- gCGCC-CGGCCAGGCgGGC-GGCCUCCu -3' miRNA: 3'- gGUGGuGCUGGUCCG-CCGaCCGGGGG- -5' |
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19231 | 5' | -63.3 | NC_004684.1 | + | 11975 | 0.8 | 0.044935 |
Target: 5'- gCCACCGCGACC-GGCGGCaccgacGGCaugaCCCCg -3' miRNA: 3'- -GGUGGUGCUGGuCCGCCGa-----CCG----GGGG- -5' |
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19231 | 5' | -63.3 | NC_004684.1 | + | 54283 | 0.79 | 0.051447 |
Target: 5'- gCCACC-CGGCCGGGgGuGCgcgcaucGGCCCCCu -3' miRNA: 3'- -GGUGGuGCUGGUCCgC-CGa------CCGGGGG- -5' |
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19231 | 5' | -63.3 | NC_004684.1 | + | 61169 | 0.77 | 0.067334 |
Target: 5'- gCCACC-CGGCCAGGuCGGCgggguuggUGGCCUCg -3' miRNA: 3'- -GGUGGuGCUGGUCC-GCCG--------ACCGGGGg -5' |
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19231 | 5' | -63.3 | NC_004684.1 | + | 57813 | 0.76 | 0.079037 |
Target: 5'- cCCgACCACGGCCuggucccGGCGGUgcUGGCCgCCg -3' miRNA: 3'- -GG-UGGUGCUGGu------CCGCCG--ACCGGgGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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