miRNA display CGI


Results 1 - 20 of 278 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19231 5' -63.3 NC_004684.1 + 50095 1.12 0.000147
Target:  5'- uCCACCACGACCAGGCGGCUGGCCCCCa -3'
miRNA:   3'- -GGUGGUGCUGGUCCGCCGACCGGGGG- -5'
19231 5' -63.3 NC_004684.1 + 39329 0.82 0.030695
Target:  5'- -uGCCGCGcCCAGGcCGGUUGGCCgCCCa -3'
miRNA:   3'- ggUGGUGCuGGUCC-GCCGACCGG-GGG- -5'
19231 5' -63.3 NC_004684.1 + 65321 0.81 0.03368
Target:  5'- gCACCACGGCCAGcGCcaggcaggccacgauGGC-GGCCCCCa -3'
miRNA:   3'- gGUGGUGCUGGUC-CG---------------CCGaCCGGGGG- -5'
19231 5' -63.3 NC_004684.1 + 59754 0.8 0.043732
Target:  5'- gUCACCACGcccGCCAcGGCGaGCUGGCUCUCg -3'
miRNA:   3'- -GGUGGUGC---UGGU-CCGC-CGACCGGGGG- -5'
19231 5' -63.3 NC_004684.1 + 50328 0.8 0.043732
Target:  5'- gCGCC-CGGCCAGGCgGGC-GGCCUCCu -3'
miRNA:   3'- gGUGGuGCUGGUCCG-CCGaCCGGGGG- -5'
19231 5' -63.3 NC_004684.1 + 11975 0.8 0.044935
Target:  5'- gCCACCGCGACC-GGCGGCaccgacGGCaugaCCCCg -3'
miRNA:   3'- -GGUGGUGCUGGuCCGCCGa-----CCG----GGGG- -5'
19231 5' -63.3 NC_004684.1 + 50698 0.79 0.048739
Target:  5'- aCACCACG-CCAGGCGGCaGGCCagaCa -3'
miRNA:   3'- gGUGGUGCuGGUCCGCCGaCCGGgg-G- -5'
19231 5' -63.3 NC_004684.1 + 54283 0.79 0.051447
Target:  5'- gCCACC-CGGCCGGGgGuGCgcgcaucGGCCCCCu -3'
miRNA:   3'- -GGUGGuGCUGGUCCgC-CGa------CCGGGGG- -5'
19231 5' -63.3 NC_004684.1 + 58268 0.78 0.05731
Target:  5'- -gACCAUGGCCucGGCGGUgaUGGCCCCa -3'
miRNA:   3'- ggUGGUGCUGGu-CCGCCG--ACCGGGGg -5'
19231 5' -63.3 NC_004684.1 + 9577 0.78 0.062127
Target:  5'- aCCGCCGgGACCAGGCcguGGUcgGGUUCCCa -3'
miRNA:   3'- -GGUGGUgCUGGUCCG---CCGa-CCGGGGG- -5'
19231 5' -63.3 NC_004684.1 + 61169 0.77 0.067334
Target:  5'- gCCACC-CGGCCAGGuCGGCgggguuggUGGCCUCg -3'
miRNA:   3'- -GGUGGuGCUGGUCC-GCCG--------ACCGGGGg -5'
19231 5' -63.3 NC_004684.1 + 57813 0.76 0.079037
Target:  5'- cCCgACCACGGCCuggucccGGCGGUgcUGGCCgCCg -3'
miRNA:   3'- -GG-UGGUGCUGGu------CCGCCG--ACCGGgGG- -5'
19231 5' -63.3 NC_004684.1 + 59861 0.75 0.090014
Target:  5'- gCCACgGCGGCCAGGuCGGUccgGGCagguccaCCCCg -3'
miRNA:   3'- -GGUGgUGCUGGUCC-GCCGa--CCG-------GGGG- -5'
19231 5' -63.3 NC_004684.1 + 19449 0.75 0.090253
Target:  5'- gCGcCCAUGcCCGGGCGGCggUGGCCCgCg -3'
miRNA:   3'- gGU-GGUGCuGGUCCGCCG--ACCGGGgG- -5'
19231 5' -63.3 NC_004684.1 + 40631 0.75 0.09515
Target:  5'- aCCGCCgcGCGGCCGacgaacuuGGgGGcCUGGCCCCg -3'
miRNA:   3'- -GGUGG--UGCUGGU--------CCgCC-GACCGGGGg -5'
19231 5' -63.3 NC_004684.1 + 57245 0.75 0.097692
Target:  5'- cCCACCugGG-CGGGCGGCaccgucGGCCCgCa -3'
miRNA:   3'- -GGUGGugCUgGUCCGCCGa-----CCGGGgG- -5'
19231 5' -63.3 NC_004684.1 + 24913 0.75 0.105707
Target:  5'- gCCGCCGCGAUCA-GCGcGCUGGgcggcgaCCCCg -3'
miRNA:   3'- -GGUGGUGCUGGUcCGC-CGACCg------GGGG- -5'
19231 5' -63.3 NC_004684.1 + 20605 0.75 0.105707
Target:  5'- aCCGCCACGACCGGaCGGUcgacGGUUCCUg -3'
miRNA:   3'- -GGUGGUGCUGGUCcGCCGa---CCGGGGG- -5'
19231 5' -63.3 NC_004684.1 + 23670 0.74 0.10823
Target:  5'- aCACCgACGGCCuGGuCGGCccggaccagagcgUGGCCUCCa -3'
miRNA:   3'- gGUGG-UGCUGGuCC-GCCG-------------ACCGGGGG- -5'
19231 5' -63.3 NC_004684.1 + 1515 0.74 0.108514
Target:  5'- aCCACUACGGcgucaaccccuCCgAGGUGGCcaccagcGGCCCCCa -3'
miRNA:   3'- -GGUGGUGCU-----------GG-UCCGCCGa------CCGGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.