miRNA display CGI


Results 1 - 20 of 278 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19231 5' -63.3 NC_004684.1 + 246 0.71 0.185464
Target:  5'- gCCGCCACGAUcaucgugCAGGCcgacGGCgaGGCCUUCg -3'
miRNA:   3'- -GGUGGUGCUG-------GUCCG----CCGa-CCGGGGG- -5'
19231 5' -63.3 NC_004684.1 + 318 0.67 0.329926
Target:  5'- -gACCAaGACCGGGCGGCccaacgagguguUGGCgggcaaccacaCCCUg -3'
miRNA:   3'- ggUGGUgCUGGUCCGCCG------------ACCG-----------GGGG- -5'
19231 5' -63.3 NC_004684.1 + 399 0.72 0.159837
Target:  5'- aCCGCCgugGCGggcaaGCUGGGCGaCUGGCaCCCCg -3'
miRNA:   3'- -GGUGG---UGC-----UGGUCCGCcGACCG-GGGG- -5'
19231 5' -63.3 NC_004684.1 + 522 0.7 0.210472
Target:  5'- gCCACCGgcgcugacgugcUGGCCAGcGCGGUcgaGGCCgCCa -3'
miRNA:   3'- -GGUGGU------------GCUGGUC-CGCCGa--CCGGgGG- -5'
19231 5' -63.3 NC_004684.1 + 746 0.66 0.401866
Target:  5'- aCACCgACGcCCuGGCGGC--GCUCCUg -3'
miRNA:   3'- gGUGG-UGCuGGuCCGCCGacCGGGGG- -5'
19231 5' -63.3 NC_004684.1 + 768 0.69 0.26794
Target:  5'- gCCACCAaGGCCgcAGGCaccaaGCUGGCCaagaaCCa -3'
miRNA:   3'- -GGUGGUgCUGG--UCCGc----CGACCGGg----GG- -5'
19231 5' -63.3 NC_004684.1 + 871 0.69 0.267307
Target:  5'- cCCGCCG-GGCCgcgcugaAGGCGGCccgcgaGGCCgCCg -3'
miRNA:   3'- -GGUGGUgCUGG-------UCCGCCGa-----CCGGgGG- -5'
19231 5' -63.3 NC_004684.1 + 1230 0.66 0.393394
Target:  5'- gCCuCgGCGGCCuGGuCGGUcgcccGGCCCCg -3'
miRNA:   3'- -GGuGgUGCUGGuCC-GCCGa----CCGGGGg -5'
19231 5' -63.3 NC_004684.1 + 1397 0.69 0.25551
Target:  5'- -gGCgGCGGCUaccgguacGGGCGGCUGaGCCUgCg -3'
miRNA:   3'- ggUGgUGCUGG--------UCCGCCGAC-CGGGgG- -5'
19231 5' -63.3 NC_004684.1 + 1456 0.67 0.337432
Target:  5'- aCCACCugGucgagaccggGCCGGacgugcccgguGCGGC-GGCCCUg -3'
miRNA:   3'- -GGUGGugC----------UGGUC-----------CGCCGaCCGGGGg -5'
19231 5' -63.3 NC_004684.1 + 1515 0.74 0.108514
Target:  5'- aCCACUACGGcgucaaccccuCCgAGGUGGCcaccagcGGCCCCCa -3'
miRNA:   3'- -GGUGGUGCU-----------GG-UCCGCCGa------CCGGGGG- -5'
19231 5' -63.3 NC_004684.1 + 1816 0.66 0.368685
Target:  5'- -gACCGaGGCCAuGGCGGCUGaCCUgCg -3'
miRNA:   3'- ggUGGUgCUGGU-CCGCCGACcGGGgG- -5'
19231 5' -63.3 NC_004684.1 + 2024 0.68 0.286824
Target:  5'- uCCGCgAUGACCGucgcccuGGUGGCccugggGGCCgCCa -3'
miRNA:   3'- -GGUGgUGCUGGU-------CCGCCGa-----CCGGgGG- -5'
19231 5' -63.3 NC_004684.1 + 2251 0.66 0.401866
Target:  5'- aCGCCACgcuGAUCAGcGCGGCggcgGGCauugCCgCCa -3'
miRNA:   3'- gGUGGUG---CUGGUC-CGCCGa---CCG----GG-GG- -5'
19231 5' -63.3 NC_004684.1 + 2450 0.66 0.385039
Target:  5'- gCCACCGCccGCCAGGCG-CUcaccGCCgCCa -3'
miRNA:   3'- -GGUGGUGc-UGGUCCGCcGAc---CGGgGG- -5'
19231 5' -63.3 NC_004684.1 + 3091 0.68 0.315287
Target:  5'- aCCACCACGACggccaGGGCGcacuGCgcgcGGucaucuCCCCCg -3'
miRNA:   3'- -GGUGGUGCUGg----UCCGC----CGa---CC------GGGGG- -5'
19231 5' -63.3 NC_004684.1 + 3480 0.7 0.232073
Target:  5'- -aGCCACG-CCGGGCcGCaccgUGGCCgCCa -3'
miRNA:   3'- ggUGGUGCuGGUCCGcCG----ACCGGgGG- -5'
19231 5' -63.3 NC_004684.1 + 3497 0.69 0.25551
Target:  5'- gUACCugGACCAccuGGCaccGCUGGgCCCg -3'
miRNA:   3'- gGUGGugCUGGU---CCGc--CGACCgGGGg -5'
19231 5' -63.3 NC_004684.1 + 3892 0.69 0.25551
Target:  5'- gCCGCCcuGCuGGCgCAGGCGcaGCUGgaggccucgcGCCCCCg -3'
miRNA:   3'- -GGUGG--UG-CUG-GUCCGC--CGAC----------CGGGGG- -5'
19231 5' -63.3 NC_004684.1 + 4006 0.66 0.368685
Target:  5'- aCCGCUACGccGCCAucGGCuGGCgcgucGGCCgCUCg -3'
miRNA:   3'- -GGUGGUGC--UGGU--CCG-CCGa----CCGG-GGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.