miRNA display CGI


Results 1 - 20 of 233 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19232 5' -64 NC_004684.1 + 26420 0.66 0.349727
Target:  5'- gCGCUGG-CAGCgggguucgccGCCGguGGCCCGguguACGGc -3'
miRNA:   3'- aGCGACCgGUCG----------CGGU--CCGGGC----UGCC- -5'
19232 5' -64 NC_004684.1 + 53199 0.66 0.349727
Target:  5'- cCGCUGGCCAggaauGCGuCCAGgguGCCCaGCa- -3'
miRNA:   3'- aGCGACCGGU-----CGC-GGUC---CGGGcUGcc -5'
19232 5' -64 NC_004684.1 + 62948 0.66 0.373604
Target:  5'- gUGC-GGCCuccagcuGCGCCagcAGGCCCGcGCGu -3'
miRNA:   3'- aGCGaCCGGu------CGCGG---UCCGGGC-UGCc -5'
19232 5' -64 NC_004684.1 + 32651 0.66 0.342013
Target:  5'- aUCGU--GCCGGUugGCaAGGCCUGGCGGc -3'
miRNA:   3'- -AGCGacCGGUCG--CGgUCCGGGCUGCC- -5'
19232 5' -64 NC_004684.1 + 10712 0.66 0.342013
Target:  5'- cUCGCaaccGGCagGGCaGCCAGGC-CGACGa -3'
miRNA:   3'- -AGCGa---CCGg-UCG-CGGUCCGgGCUGCc -5'
19232 5' -64 NC_004684.1 + 22044 0.66 0.334422
Target:  5'- aUGCggaacaGCCAGCGCCAGGCacaguCUGGCu- -3'
miRNA:   3'- aGCGac----CGGUCGCGGUCCG-----GGCUGcc -5'
19232 5' -64 NC_004684.1 + 37641 0.66 0.349727
Target:  5'- gCGCUGGCCAuggccGCccgGUCAGGCaUCGAccCGGu -3'
miRNA:   3'- aGCGACCGGU-----CG---CGGUCCG-GGCU--GCC- -5'
19232 5' -64 NC_004684.1 + 55871 0.66 0.334422
Target:  5'- aCGCcaaggUGGCCGGgGCauggaccuGCCCGAUGGc -3'
miRNA:   3'- aGCG-----ACCGGUCgCGguc-----CGGGCUGCC- -5'
19232 5' -64 NC_004684.1 + 33819 0.66 0.334422
Target:  5'- gCGUcGGCgGGCGgUGuGCCCGGCGGc -3'
miRNA:   3'- aGCGaCCGgUCGCgGUcCGGGCUGCC- -5'
19232 5' -64 NC_004684.1 + 22422 0.66 0.334422
Target:  5'- cCGCUgGGCCucaaCGCCAucgccgucGGCgCGGCGGc -3'
miRNA:   3'- aGCGA-CCGGuc--GCGGU--------CCGgGCUGCC- -5'
19232 5' -64 NC_004684.1 + 37746 0.66 0.365523
Target:  5'- cUCGUUGGCCAGauggaagGUCAGuaCCCGACu- -3'
miRNA:   3'- -AGCGACCGGUCg------CGGUCc-GGGCUGcc -5'
19232 5' -64 NC_004684.1 + 22812 0.66 0.342013
Target:  5'- aCGCUGGUCGacCGgCAGuuCCCGGCGGu -3'
miRNA:   3'- aGCGACCGGUc-GCgGUCc-GGGCUGCC- -5'
19232 5' -64 NC_004684.1 + 58945 0.66 0.342013
Target:  5'- -aGCcaGGCCuuGCGCCGGGCCCu---- -3'
miRNA:   3'- agCGa-CCGGu-CGCGGUCCGGGcugcc -5'
19232 5' -64 NC_004684.1 + 23644 0.66 0.334422
Target:  5'- cUUGCUGGCaccgcuGCuGaCCGGGUacaCCGACGGc -3'
miRNA:   3'- -AGCGACCGgu----CG-C-GGUCCG---GGCUGCC- -5'
19232 5' -64 NC_004684.1 + 62294 0.66 0.349727
Target:  5'- gCGCUGcuCCAGCGCCgcgcGGGCCuCcGCGa -3'
miRNA:   3'- aGCGACc-GGUCGCGG----UCCGG-GcUGCc -5'
19232 5' -64 NC_004684.1 + 32964 0.66 0.349727
Target:  5'- gCGCUGGCCAaccuCGCC--GCCuCGACGc -3'
miRNA:   3'- aGCGACCGGUc---GCGGucCGG-GCUGCc -5'
19232 5' -64 NC_004684.1 + 3872 0.66 0.363123
Target:  5'- cCGCU-GCgCAGUGCCaAGGCCUGGucagacauccucucCGGg -3'
miRNA:   3'- aGCGAcCG-GUCGCGG-UCCGGGCU--------------GCC- -5'
19232 5' -64 NC_004684.1 + 53075 0.66 0.357564
Target:  5'- cUCGCUGGuaCCGGCGUacaccuGCgCGGCGGc -3'
miRNA:   3'- -AGCGACC--GGUCGCGguc---CGgGCUGCC- -5'
19232 5' -64 NC_004684.1 + 42759 0.66 0.3552
Target:  5'- -gGcCUGGCCGGUGCgAuccccgguuugagcGGCCUGcCGGg -3'
miRNA:   3'- agC-GACCGGUCGCGgU--------------CCGGGCuGCC- -5'
19232 5' -64 NC_004684.1 + 6835 0.66 0.365523
Target:  5'- -aGCUGGCCuacGGCGCgaaGGGCgacgCCGugGu -3'
miRNA:   3'- agCGACCGG---UCGCGg--UCCG----GGCugCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.