miRNA display CGI


Results 1 - 20 of 233 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19232 5' -64 NC_004684.1 + 15678 0.71 0.166294
Target:  5'- aCGUcgUGGCCAGCGgC-GGCaCCGACGc -3'
miRNA:   3'- aGCG--ACCGGUCGCgGuCCG-GGCUGCc -5'
19232 5' -64 NC_004684.1 + 63498 0.73 0.125067
Target:  5'- -aGCUGcGCCuGCGCCAgcagggcGGCCUGGCGu -3'
miRNA:   3'- agCGAC-CGGuCGCGGU-------CCGGGCUGCc -5'
19232 5' -64 NC_004684.1 + 65452 0.72 0.139058
Target:  5'- gCGC-GGCCAccguGCGCCgguaccAGGCCCGGCaGGc -3'
miRNA:   3'- aGCGaCCGGU----CGCGG------UCCGGGCUG-CC- -5'
19232 5' -64 NC_004684.1 + 55555 0.72 0.142683
Target:  5'- cCGCUGGCC-GC-CguGGCCCGGUGGc -3'
miRNA:   3'- aGCGACCGGuCGcGguCCGGGCUGCC- -5'
19232 5' -64 NC_004684.1 + 64751 0.71 0.153686
Target:  5'- cUGCUGGCCgagcuGGUGCCAGGCgucggucuggcugUCGGCGa -3'
miRNA:   3'- aGCGACCGG-----UCGCGGUCCG-------------GGCUGCc -5'
19232 5' -64 NC_004684.1 + 1998 0.71 0.154079
Target:  5'- cUGCUGGCCugGGCGCUGGaccgcCCCGACGu -3'
miRNA:   3'- aGCGACCGG--UCGCGGUCc----GGGCUGCc -5'
19232 5' -64 NC_004684.1 + 11940 0.71 0.154079
Target:  5'- cCGCUGGCCauGGuCGCCA-GCCUGGCa- -3'
miRNA:   3'- aGCGACCGG--UC-GCGGUcCGGGCUGcc -5'
19232 5' -64 NC_004684.1 + 62540 0.71 0.162128
Target:  5'- gUCGCUGGCCAGCagcucguccaGCUuGGCCUuguCGGc -3'
miRNA:   3'- -AGCGACCGGUCG----------CGGuCCGGGcu-GCC- -5'
19232 5' -64 NC_004684.1 + 14692 0.71 0.166294
Target:  5'- cCGCUGGUCAacccuuCGCCgcaGGGCCUGuACGGg -3'
miRNA:   3'- aGCGACCGGUc-----GCGG---UCCGGGC-UGCC- -5'
19232 5' -64 NC_004684.1 + 49218 0.73 0.112979
Target:  5'- -aGUcGGUCGGUGCCGGGCCgGGCGu -3'
miRNA:   3'- agCGaCCGGUCGCGGUCCGGgCUGCc -5'
19232 5' -64 NC_004684.1 + 40351 0.73 0.112979
Target:  5'- gUCGCUGGCggCGGCcuugGCCuuggGGGCCuCGGCGGu -3'
miRNA:   3'- -AGCGACCG--GUCG----CGG----UCCGG-GCUGCC- -5'
19232 5' -64 NC_004684.1 + 49620 0.74 0.104434
Target:  5'- -gGCUGGCCGGUGuCCA-GCCCaGCGGc -3'
miRNA:   3'- agCGACCGGUCGC-GGUcCGGGcUGCC- -5'
19232 5' -64 NC_004684.1 + 65313 0.82 0.023644
Target:  5'- cUCGCUgugcaccacGGCCAGCGCCAGGCaggccaCGAUGGc -3'
miRNA:   3'- -AGCGA---------CCGGUCGCGGUCCGg-----GCUGCC- -5'
19232 5' -64 NC_004684.1 + 16258 0.79 0.039755
Target:  5'- gUCGCUcGCCcgguguucGCGCCGGGCCCGACGcGg -3'
miRNA:   3'- -AGCGAcCGGu-------CGCGGUCCGGGCUGC-C- -5'
19232 5' -64 NC_004684.1 + 66513 0.76 0.066465
Target:  5'- cUCGCgGGCCgccuucAGCGC--GGCCCGGCGGg -3'
miRNA:   3'- -AGCGaCCGG------UCGCGguCCGGGCUGCC- -5'
19232 5' -64 NC_004684.1 + 6217 0.76 0.068272
Target:  5'- gCGCgaucucGGCCAGCugggcgGCCAGGCCuuCGACGGu -3'
miRNA:   3'- aGCGa-----CCGGUCG------CGGUCCGG--GCUGCC- -5'
19232 5' -64 NC_004684.1 + 65996 0.76 0.075985
Target:  5'- gUCGCUGGCCAGUGCaacggcGGCCUuGGCGu -3'
miRNA:   3'- -AGCGACCGGUCGCGgu----CCGGG-CUGCc -5'
19232 5' -64 NC_004684.1 + 55645 0.75 0.08231
Target:  5'- -gGCUGGCguGCGUggaggaGGGCCUGGCGGc -3'
miRNA:   3'- agCGACCGguCGCGg-----UCCGGGCUGCC- -5'
19232 5' -64 NC_004684.1 + 46394 0.75 0.089137
Target:  5'- gUCGCUGGCCGGgaugGUCGGGUCC-ACGGc -3'
miRNA:   3'- -AGCGACCGGUCg---CGGUCCGGGcUGCC- -5'
19232 5' -64 NC_004684.1 + 56688 0.75 0.089137
Target:  5'- gUGCUGGCgCAGaaGCUGGGCCCGGgGGu -3'
miRNA:   3'- aGCGACCG-GUCg-CGGUCCGGGCUgCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.