miRNA display CGI


Results 1 - 20 of 233 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19232 5' -64 NC_004684.1 + 50277 1.09 0.000219
Target:  5'- gUCGCUGGCCAGCGCCAGGCCCGACGGc -3'
miRNA:   3'- -AGCGACCGGUCGCGGUCCGGGCUGCC- -5'
19232 5' -64 NC_004684.1 + 65313 0.82 0.023644
Target:  5'- cUCGCUgugcaccacGGCCAGCGCCAGGCaggccaCGAUGGc -3'
miRNA:   3'- -AGCGA---------CCGGUCGCGGUCCGg-----GCUGCC- -5'
19232 5' -64 NC_004684.1 + 4861 0.8 0.038687
Target:  5'- cUGCUGGCCAGCGaCCAGG-CUGACuGGg -3'
miRNA:   3'- aGCGACCGGUCGC-GGUCCgGGCUG-CC- -5'
19232 5' -64 NC_004684.1 + 16258 0.79 0.039755
Target:  5'- gUCGCUcGCCcgguguucGCGCCGGGCCCGACGcGg -3'
miRNA:   3'- -AGCGAcCGGu-------CGCGGUCCGGGCUGC-C- -5'
19232 5' -64 NC_004684.1 + 48046 0.77 0.056554
Target:  5'- cCGCUGGaUCAGCGCCucccgcucGGCCaCGGCGGc -3'
miRNA:   3'- aGCGACC-GGUCGCGGu-------CCGG-GCUGCC- -5'
19232 5' -64 NC_004684.1 + 66513 0.76 0.066465
Target:  5'- cUCGCgGGCCgccuucAGCGC--GGCCCGGCGGg -3'
miRNA:   3'- -AGCGaCCGG------UCGCGguCCGGGCUGCC- -5'
19232 5' -64 NC_004684.1 + 6217 0.76 0.068272
Target:  5'- gCGCgaucucGGCCAGCugggcgGCCAGGCCuuCGACGGu -3'
miRNA:   3'- aGCGa-----CCGGUCG------CGGUCCGG--GCUGCC- -5'
19232 5' -64 NC_004684.1 + 65996 0.76 0.075985
Target:  5'- gUCGCUGGCCAGUGCaacggcGGCCUuGGCGu -3'
miRNA:   3'- -AGCGACCGGUCGCGgu----CCGGG-CUGCc -5'
19232 5' -64 NC_004684.1 + 41005 0.75 0.077211
Target:  5'- gCGUUGGCCAGaucgccgccgacguUGCCGGugccguuGCCCGACGGa -3'
miRNA:   3'- aGCGACCGGUC--------------GCGGUC-------CGGGCUGCC- -5'
19232 5' -64 NC_004684.1 + 55645 0.75 0.08231
Target:  5'- -gGCUGGCguGCGUggaggaGGGCCUGGCGGc -3'
miRNA:   3'- agCGACCGguCGCGg-----UCCGGGCUGCC- -5'
19232 5' -64 NC_004684.1 + 56688 0.75 0.089137
Target:  5'- gUGCUGGCgCAGaaGCUGGGCCCGGgGGu -3'
miRNA:   3'- aGCGACCG-GUCg-CGGUCCGGGCUgCC- -5'
19232 5' -64 NC_004684.1 + 46394 0.75 0.089137
Target:  5'- gUCGCUGGCCGGgaugGUCGGGUCC-ACGGc -3'
miRNA:   3'- -AGCGACCGGUCg---CGGUCCGGGcUGCC- -5'
19232 5' -64 NC_004684.1 + 8935 0.74 0.093983
Target:  5'- gCGCUGGCCucagcgGGCaGUCGGGUCCGgcACGGg -3'
miRNA:   3'- aGCGACCGG------UCG-CGGUCCGGGC--UGCC- -5'
19232 5' -64 NC_004684.1 + 1401 0.74 0.093983
Target:  5'- gUUGCacUGGCCAGCGaCCuggAGGCCUGcCGGg -3'
miRNA:   3'- -AGCG--ACCGGUCGC-GG---UCCGGGCuGCC- -5'
19232 5' -64 NC_004684.1 + 49620 0.74 0.104434
Target:  5'- -gGCUGGCCGGUGuCCA-GCCCaGCGGc -3'
miRNA:   3'- agCGACCGGUCGC-GGUcCGGGcUGCC- -5'
19232 5' -64 NC_004684.1 + 60562 0.74 0.104434
Target:  5'- uUCGCgccguaGGCCAGCuccuCCAGG-CCGACGGc -3'
miRNA:   3'- -AGCGa-----CCGGUCGc---GGUCCgGGCUGCC- -5'
19232 5' -64 NC_004684.1 + 40351 0.73 0.112979
Target:  5'- gUCGCUGGCggCGGCcuugGCCuuggGGGCCuCGGCGGu -3'
miRNA:   3'- -AGCGACCG--GUCG----CGG----UCCGG-GCUGCC- -5'
19232 5' -64 NC_004684.1 + 49218 0.73 0.112979
Target:  5'- -aGUcGGUCGGUGCCGGGCCgGGCGu -3'
miRNA:   3'- agCGaCCGGUCGCGGUCCGGgCUGCc -5'
19232 5' -64 NC_004684.1 + 29782 0.73 0.119035
Target:  5'- gCGUUcGGCaugGGCgGCCGGGCCCGcACGGu -3'
miRNA:   3'- aGCGA-CCGg--UCG-CGGUCCGGGC-UGCC- -5'
19232 5' -64 NC_004684.1 + 25567 0.73 0.119035
Target:  5'- gUCGgUGGCCAGCGCCuccggguGGUCC-ACGa -3'
miRNA:   3'- -AGCgACCGGUCGCGGu------CCGGGcUGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.