miRNA display CGI


Results 1 - 20 of 233 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19232 5' -64 NC_004684.1 + 305 0.68 0.259104
Target:  5'- uUCGCUGGCC-GCcgagGCCAacGCCCGcacCGGg -3'
miRNA:   3'- -AGCGACCGGuCG----CGGUc-CGGGCu--GCC- -5'
19232 5' -64 NC_004684.1 + 537 0.7 0.193352
Target:  5'- gUGCUGGCCAGCGCggucgAGGCcgccaCCGA-GGa -3'
miRNA:   3'- aGCGACCGGUCGCGg----UCCG-----GGCUgCC- -5'
19232 5' -64 NC_004684.1 + 790 0.67 0.312396
Target:  5'- -aGCUGGCCaAGaaCCAGGUCgugcgCGACGGc -3'
miRNA:   3'- agCGACCGG-UCgcGGUCCGG-----GCUGCC- -5'
19232 5' -64 NC_004684.1 + 896 0.66 0.33217
Target:  5'- cCGCgaGGCCGcCGCCaAGGCCUagccgccaccggguGGCGGc -3'
miRNA:   3'- aGCGa-CCGGUcGCGG-UCCGGG--------------CUGCC- -5'
19232 5' -64 NC_004684.1 + 1079 0.68 0.265338
Target:  5'- gCGCUGGacgugaUCGGUGaCCAGGCCgCGACc- -3'
miRNA:   3'- aGCGACC------GGUCGC-GGUCCGG-GCUGcc -5'
19232 5' -64 NC_004684.1 + 1401 0.74 0.093983
Target:  5'- gUUGCacUGGCCAGCGaCCuggAGGCCUGcCGGg -3'
miRNA:   3'- -AGCG--ACCGGUCGC-GG---UCCGGGCuGCC- -5'
19232 5' -64 NC_004684.1 + 1965 0.67 0.291489
Target:  5'- cCGCacGCCAGCG-CAGcGCCUGGCGc -3'
miRNA:   3'- aGCGacCGGUCGCgGUC-CGGGCUGCc -5'
19232 5' -64 NC_004684.1 + 1998 0.71 0.154079
Target:  5'- cUGCUGGCCugGGCGCUGGaccgcCCCGACGu -3'
miRNA:   3'- aGCGACCGG--UCGCGGUCc----GGGCUGCc -5'
19232 5' -64 NC_004684.1 + 2376 0.69 0.24112
Target:  5'- aUCGacaUGGCCAccuuCGCCGGGUgCGGCGu -3'
miRNA:   3'- -AGCg--ACCGGUc---GCGGUCCGgGCUGCc -5'
19232 5' -64 NC_004684.1 + 2651 0.7 0.208278
Target:  5'- -aGCUcGGCCAGCaggucgGCCAcaagauGGaCCCGAUGGa -3'
miRNA:   3'- agCGA-CCGGUCG------CGGU------CC-GGGCUGCC- -5'
19232 5' -64 NC_004684.1 + 2705 0.68 0.24759
Target:  5'- -gGcCUGGCCGGUGCCGGGggcaagugcgccacaCCGcACGGc -3'
miRNA:   3'- agC-GACCGGUCGCGGUCCg--------------GGC-UGCC- -5'
19232 5' -64 NC_004684.1 + 3484 0.67 0.310255
Target:  5'- aCGCcgGGCCgcaccguGGcCGCCAGGacgccgcaaucgCCGACGGg -3'
miRNA:   3'- aGCGa-CCGG-------UC-GCGGUCCg-----------GGCUGCC- -5'
19232 5' -64 NC_004684.1 + 3508 0.67 0.319614
Target:  5'- aC-CUGGCac-CGCUGGGCCCGAUGa -3'
miRNA:   3'- aGcGACCGgucGCGGUCCGGGCUGCc -5'
19232 5' -64 NC_004684.1 + 3854 0.69 0.24112
Target:  5'- -aGgaGGCCgAGCGCCAcGCCCG-CGa -3'
miRNA:   3'- agCgaCCGG-UCGCGGUcCGGGCuGCc -5'
19232 5' -64 NC_004684.1 + 3872 0.66 0.363123
Target:  5'- cCGCU-GCgCAGUGCCaAGGCCUGGucagacauccucucCGGg -3'
miRNA:   3'- aGCGAcCG-GUCGCGG-UCCGGGCU--------------GCC- -5'
19232 5' -64 NC_004684.1 + 4234 0.68 0.278168
Target:  5'- gCGCaaccUGGuUCGGagucugaGCCGGuGCCCGGCGGa -3'
miRNA:   3'- aGCG----ACC-GGUCg------CGGUC-CGGGCUGCC- -5'
19232 5' -64 NC_004684.1 + 4477 0.72 0.128687
Target:  5'- uUCGUcaccGGCCAGgGCCuGGCCCGccguggcaACGGc -3'
miRNA:   3'- -AGCGa---CCGGUCgCGGuCCGGGC--------UGCC- -5'
19232 5' -64 NC_004684.1 + 4861 0.8 0.038687
Target:  5'- cUGCUGGCCAGCGaCCAGG-CUGACuGGg -3'
miRNA:   3'- aGCGACCGGUCGC-GGUCCgGGCUG-CC- -5'
19232 5' -64 NC_004684.1 + 4895 0.67 0.291489
Target:  5'- -gGC-GGCCuGGuCGCCAccGGCCuCGGCGGc -3'
miRNA:   3'- agCGaCCGG-UC-GCGGU--CCGG-GCUGCC- -5'
19232 5' -64 NC_004684.1 + 5032 0.66 0.365523
Target:  5'- aCGgUGGCCAccacGCGUCuGGCacCCGGCGc -3'
miRNA:   3'- aGCgACCGGU----CGCGGuCCG--GGCUGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.