miRNA display CGI


Results 1 - 20 of 113 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19234 5' -59.7 NC_004684.1 + 16802 0.65 0.545413
Target:  5'- cGUGUGGUGgGCgcgccauucgcgccAGGUUcaaAGCGggUCGc -3'
miRNA:   3'- aCGCGCCACgCG--------------UCCGG---UCGCuuAGC- -5'
19234 5' -59.7 NC_004684.1 + 46299 0.65 0.545413
Target:  5'- aGCGCGuugcggcgcuuggcGUGCGCcagcgucuggAGGCUGGCGAAc-- -3'
miRNA:   3'- aCGCGC--------------CACGCG----------UCCGGUCGCUUagc -5'
19234 5' -59.7 NC_004684.1 + 52232 0.65 0.547481
Target:  5'- gUGCGUGGcgGCgGC-GGCCAGCugcgcgcuggcguGGAUCa -3'
miRNA:   3'- -ACGCGCCa-CG-CGuCCGGUCG-------------CUUAGc -5'
19234 5' -59.7 NC_004684.1 + 7856 0.66 0.504656
Target:  5'- cGCGCuGGcggugcaggaccugUGCGCAGGCCuaCGAcgCGc -3'
miRNA:   3'- aCGCG-CC--------------ACGCGUCCGGucGCUuaGC- -5'
19234 5' -59.7 NC_004684.1 + 7581 0.66 0.538197
Target:  5'- gUGCGgcUGGUGCGCGGcaacCCGGUG-GUCGu -3'
miRNA:   3'- -ACGC--GCCACGCGUCc---GGUCGCuUAGC- -5'
19234 5' -59.7 NC_004684.1 + 56873 0.66 0.50566
Target:  5'- gGCgaGCGGUGCGCcugaccgucggcGGcCCAGUGcGUCGg -3'
miRNA:   3'- aCG--CGCCACGCGu-----------CC-GGUCGCuUAGC- -5'
19234 5' -59.7 NC_004684.1 + 59700 0.66 0.50767
Target:  5'- cUGCGCGGgGUGCGGGU--GCGcAUCc -3'
miRNA:   3'- -ACGCGCCaCGCGUCCGguCGCuUAGc -5'
19234 5' -59.7 NC_004684.1 + 36773 0.66 0.527946
Target:  5'- cGCGCccGGUGCcgacGCuGGUCGGCGGcggcUCGg -3'
miRNA:   3'- aCGCG--CCACG----CGuCCGGUCGCUu---AGC- -5'
19234 5' -59.7 NC_004684.1 + 30859 0.66 0.538197
Target:  5'- aGCGCGGUGacgGCAGGCgAuguGUGGuUUGa -3'
miRNA:   3'- aCGCGCCACg--CGUCCGgU---CGCUuAGC- -5'
19234 5' -59.7 NC_004684.1 + 50788 0.66 0.535114
Target:  5'- cGCGCGGUcgguGCGCaacauGaagucgucgcgcuuGGcCCAGCGggUCa -3'
miRNA:   3'- aCGCGCCA----CGCG-----U--------------CC-GGUCGCuuAGc -5'
19234 5' -59.7 NC_004684.1 + 55942 0.66 0.506665
Target:  5'- -cCGUGGUGCGCGucggcccGGUCAGCuccGggUUGg -3'
miRNA:   3'- acGCGCCACGCGU-------CCGGUCG---CuuAGC- -5'
19234 5' -59.7 NC_004684.1 + 8482 0.66 0.50767
Target:  5'- gGCGgGGUgGgGCGGGgaCGGCGAGaCGg -3'
miRNA:   3'- aCGCgCCA-CgCGUCCg-GUCGCUUaGC- -5'
19234 5' -59.7 NC_004684.1 + 26988 0.66 0.496659
Target:  5'- gGC-CGGUGCgagcgcgGCGGGCgCGGCG-AUCa -3'
miRNA:   3'- aCGcGCCACG-------CGUCCG-GUCGCuUAGc -5'
19234 5' -59.7 NC_004684.1 + 44914 0.66 0.497656
Target:  5'- gGCGuCGGUGCGC--GCCGG-GuAGUCGg -3'
miRNA:   3'- aCGC-GCCACGCGucCGGUCgC-UUAGC- -5'
19234 5' -59.7 NC_004684.1 + 59828 0.66 0.517768
Target:  5'- gGCGCGGUGC-CGGuGUaGGCGAAcCa -3'
miRNA:   3'- aCGCGCCACGcGUC-CGgUCGCUUaGc -5'
19234 5' -59.7 NC_004684.1 + 55037 0.66 0.497656
Target:  5'- --gGUGGUGCGCAGugugcCCAGCGcgguGAUCa -3'
miRNA:   3'- acgCGCCACGCGUCc----GGUCGC----UUAGc -5'
19234 5' -59.7 NC_004684.1 + 64294 0.66 0.497656
Target:  5'- cGCGCaGUGCGCccuGGCCGucGUGGugGUUGa -3'
miRNA:   3'- aCGCGcCACGCGu--CCGGU--CGCU--UAGC- -5'
19234 5' -59.7 NC_004684.1 + 4433 0.66 0.538197
Target:  5'- cGCGCGGgccugcugGCGCagcuggAGGCCGcacgugcgcGCGAggccGUCGu -3'
miRNA:   3'- aCGCGCCa-------CGCG------UCCGGU---------CGCU----UAGC- -5'
19234 5' -59.7 NC_004684.1 + 8182 0.66 0.517768
Target:  5'- gGCGCGcUGgGcCAGGCgCAGCuGAUCa -3'
miRNA:   3'- aCGCGCcACgC-GUCCG-GUCGcUUAGc -5'
19234 5' -59.7 NC_004684.1 + 31671 0.66 0.537169
Target:  5'- cUGUcgGCGGUGCGggugaaaCAGGaCCGGCuGAUCa -3'
miRNA:   3'- -ACG--CGCCACGC-------GUCC-GGUCGcUUAGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.