miRNA display CGI


Results 1 - 20 of 113 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19234 5' -59.7 NC_004684.1 + 452 0.69 0.377052
Target:  5'- cUGCGCGcaucGUG-GCcguggacaaccGGGCCAGCGAgGUCGg -3'
miRNA:   3'- -ACGCGC----CACgCG-----------UCCGGUCGCU-UAGC- -5'
19234 5' -59.7 NC_004684.1 + 8137 0.69 0.336191
Target:  5'- cGCGuCGGUGCuCGGGUgCAGCaGAUCGu -3'
miRNA:   3'- aCGC-GCCACGcGUCCG-GUCGcUUAGC- -5'
19234 5' -59.7 NC_004684.1 + 62974 0.69 0.336191
Target:  5'- gUGCucgGUGGUGCGCAcguGGCCGGUGGc--- -3'
miRNA:   3'- -ACG---CGCCACGCGU---CCGGUCGCUuagc -5'
19234 5' -59.7 NC_004684.1 + 67079 0.69 0.336191
Target:  5'- gGUGCGG-GCGUuggccucggcGGCCAGCGAAcUCu -3'
miRNA:   3'- aCGCGCCaCGCGu---------CCGGUCGCUU-AGc -5'
19234 5' -59.7 NC_004684.1 + 42184 0.69 0.344099
Target:  5'- cUGCGCGGUGagcaGUGGGCC-GUGGAg-- -3'
miRNA:   3'- -ACGCGCCACg---CGUCCGGuCGCUUagc -5'
19234 5' -59.7 NC_004684.1 + 50383 0.69 0.344099
Target:  5'- cGCuCGGUGCGCAuGUCGGCGGGg-- -3'
miRNA:   3'- aCGcGCCACGCGUcCGGUCGCUUagc -5'
19234 5' -59.7 NC_004684.1 + 48965 0.69 0.360312
Target:  5'- gGCGgGGUG-GCcgGGGCgGGCGcGUCGg -3'
miRNA:   3'- aCGCgCCACgCG--UCCGgUCGCuUAGC- -5'
19234 5' -59.7 NC_004684.1 + 12768 0.69 0.360312
Target:  5'- cGCGCGGcUGCGCcugcGGCCAaCGAGg-- -3'
miRNA:   3'- aCGCGCC-ACGCGu---CCGGUcGCUUagc -5'
19234 5' -59.7 NC_004684.1 + 41586 0.69 0.368617
Target:  5'- gGCgGCGGcauuuccugGCGCAGGUCGGCcacGAGUCc -3'
miRNA:   3'- aCG-CGCCa--------CGCGUCCGGUCG---CUUAGc -5'
19234 5' -59.7 NC_004684.1 + 13098 0.7 0.328416
Target:  5'- cGCGCGGUGCaCGccgccccaccGGCCAGCGcggCa -3'
miRNA:   3'- aCGCGCCACGcGU----------CCGGUCGCuuaGc -5'
19234 5' -59.7 NC_004684.1 + 60336 0.7 0.313269
Target:  5'- aGCGCGaucaccGCGCGuucGGCCAGCGGugccagGUCGg -3'
miRNA:   3'- aCGCGCca----CGCGU---CCGGUCGCU------UAGC- -5'
19234 5' -59.7 NC_004684.1 + 65889 0.71 0.284578
Target:  5'- aGCGCGGcGCGCAGGUUGGCc----- -3'
miRNA:   3'- aCGCGCCaCGCGUCCGGUCGcuuagc -5'
19234 5' -59.7 NC_004684.1 + 60597 0.77 0.105938
Target:  5'- cGCGCacGGUGCGCAGGCCggucacccGGCGcacGUCGc -3'
miRNA:   3'- aCGCG--CCACGCGUCCGG--------UCGCu--UAGC- -5'
19234 5' -59.7 NC_004684.1 + 30143 0.73 0.205638
Target:  5'- cGCGCaGuGUGCGCGucGGCCAGUGGG-CGa -3'
miRNA:   3'- aCGCG-C-CACGCGU--CCGGUCGCUUaGC- -5'
19234 5' -59.7 NC_004684.1 + 5782 0.72 0.221987
Target:  5'- aGCGCGcuacUGCGcCAGGCguGCGAgGUCGg -3'
miRNA:   3'- aCGCGCc---ACGC-GUCCGguCGCU-UAGC- -5'
19234 5' -59.7 NC_004684.1 + 43981 0.72 0.227678
Target:  5'- gUGCGCGG-GCGUAcccGGCCAGCuGcGUUGg -3'
miRNA:   3'- -ACGCGCCaCGCGU---CCGGUCG-CuUAGC- -5'
19234 5' -59.7 NC_004684.1 + 13979 0.71 0.251684
Target:  5'- cGCGCG--GCGCAGGCCAGCc----- -3'
miRNA:   3'- aCGCGCcaCGCGUCCGGUCGcuuagc -5'
19234 5' -59.7 NC_004684.1 + 26583 0.71 0.2638
Target:  5'- cGCGCGGcggugUGCGCGGGuucgccaCCGGCGGcggcGUCa -3'
miRNA:   3'- aCGCGCC-----ACGCGUCC-------GGUCGCU----UAGc -5'
19234 5' -59.7 NC_004684.1 + 17519 0.71 0.271028
Target:  5'- aGCGCGGUGC-CAcGCCGGaCGAcgUGg -3'
miRNA:   3'- aCGCGCCACGcGUcCGGUC-GCUuaGC- -5'
19234 5' -59.7 NC_004684.1 + 24499 0.71 0.271028
Target:  5'- gGgGCGGUGcCGCAgGGCCGcGCGu-UCGg -3'
miRNA:   3'- aCgCGCCAC-GCGU-CCGGU-CGCuuAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.