miRNA display CGI


Results 1 - 20 of 113 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19234 5' -59.7 NC_004684.1 + 52324 1.09 0.000455
Target:  5'- cUGCGCGGUGCGCAGGCCAGCGAAUCGg -3'
miRNA:   3'- -ACGCGCCACGCGUCCGGUCGCUUAGC- -5'
19234 5' -59.7 NC_004684.1 + 59294 0.78 0.094968
Target:  5'- cUGC-CGGUGgGCAGGCCGGUgucgGggUCGa -3'
miRNA:   3'- -ACGcGCCACgCGUCCGGUCG----CuuAGC- -5'
19234 5' -59.7 NC_004684.1 + 60597 0.77 0.105938
Target:  5'- cGCGCacGGUGCGCAGGCCggucacccGGCGcacGUCGc -3'
miRNA:   3'- aCGCG--CCACGCGUCCGG--------UCGCu--UAGC- -5'
19234 5' -59.7 NC_004684.1 + 5784 0.77 0.105938
Target:  5'- gUGCGUGGUGUGCGGGCgGGaCGccUCGa -3'
miRNA:   3'- -ACGCGCCACGCGUCCGgUC-GCuuAGC- -5'
19234 5' -59.7 NC_004684.1 + 5031 0.75 0.142527
Target:  5'- cGCGacgacgaGGUGCGCAGGCUGGCGcg-CGc -3'
miRNA:   3'- aCGCg------CCACGCGUCCGGUCGCuuaGC- -5'
19234 5' -59.7 NC_004684.1 + 24570 0.74 0.162728
Target:  5'- uUGUGCGGccUGaGC-GGCCAGCGAGUUGg -3'
miRNA:   3'- -ACGCGCC--ACgCGuCCGGUCGCUUAGC- -5'
19234 5' -59.7 NC_004684.1 + 14312 0.74 0.176054
Target:  5'- cGCGCaGGUGUacGCcGGuaCCAGCGAGUCGg -3'
miRNA:   3'- aCGCG-CCACG--CGuCC--GGUCGCUUAGC- -5'
19234 5' -59.7 NC_004684.1 + 30143 0.73 0.205638
Target:  5'- cGCGCaGuGUGCGCGucGGCCAGUGGG-CGa -3'
miRNA:   3'- aCGCG-C-CACGCGU--CCGGUCGCUUaGC- -5'
19234 5' -59.7 NC_004684.1 + 28438 0.72 0.216418
Target:  5'- gGUGCGGUGCuuGGuGCCGGUGAuggaGUCGc -3'
miRNA:   3'- aCGCGCCACGcgUC-CGGUCGCU----UAGC- -5'
19234 5' -59.7 NC_004684.1 + 5782 0.72 0.221987
Target:  5'- aGCGCGcuacUGCGcCAGGCguGCGAgGUCGg -3'
miRNA:   3'- aCGCGCc---ACGC-GUCCGguCGCU-UAGC- -5'
19234 5' -59.7 NC_004684.1 + 43981 0.72 0.227678
Target:  5'- gUGCGCGG-GCGUAcccGGCCAGCuGcGUUGg -3'
miRNA:   3'- -ACGCGCCaCGCGU---CCGGUCG-CuUAGC- -5'
19234 5' -59.7 NC_004684.1 + 8528 0.72 0.227678
Target:  5'- gGCGUGcUGUGCGGGCCGGaCGAggUGg -3'
miRNA:   3'- aCGCGCcACGCGUCCGGUC-GCUuaGC- -5'
19234 5' -59.7 NC_004684.1 + 65390 0.72 0.233492
Target:  5'- gGgGCGGUccaGCGCccAGGCCAGCaguGUCGa -3'
miRNA:   3'- aCgCGCCA---CGCG--UCCGGUCGcu-UAGC- -5'
19234 5' -59.7 NC_004684.1 + 13979 0.71 0.251684
Target:  5'- cGCGCG--GCGCAGGCCAGCc----- -3'
miRNA:   3'- aCGCGCcaCGCGUCCGGUCGcuuagc -5'
19234 5' -59.7 NC_004684.1 + 8921 0.71 0.251684
Target:  5'- gGCGCGGcaaguucGCGCuGGCCucAGCGGgcaGUCGg -3'
miRNA:   3'- aCGCGCCa------CGCGuCCGG--UCGCU---UAGC- -5'
19234 5' -59.7 NC_004684.1 + 26583 0.71 0.2638
Target:  5'- cGCGCGGcggugUGCGCGGGuucgccaCCGGCGGcggcGUCa -3'
miRNA:   3'- aCGCGCC-----ACGCGUCC-------GGUCGCU----UAGc -5'
19234 5' -59.7 NC_004684.1 + 19095 0.71 0.264451
Target:  5'- cUGC-UGGUGCGCgaAGGCCGGUGGGaCGu -3'
miRNA:   3'- -ACGcGCCACGCG--UCCGGUCGCUUaGC- -5'
19234 5' -59.7 NC_004684.1 + 9016 0.71 0.264451
Target:  5'- cGCGCGGUGCcguGCGGGgCGGCaaccGGcgCGg -3'
miRNA:   3'- aCGCGCCACG---CGUCCgGUCG----CUuaGC- -5'
19234 5' -59.7 NC_004684.1 + 24499 0.71 0.271028
Target:  5'- gGgGCGGUGcCGCAgGGCCGcGCGu-UCGg -3'
miRNA:   3'- aCgCGCCAC-GCGU-CCGGU-CGCuuAGC- -5'
19234 5' -59.7 NC_004684.1 + 17519 0.71 0.271028
Target:  5'- aGCGCGGUGC-CAcGCCGGaCGAcgUGg -3'
miRNA:   3'- aCGCGCCACGcGUcCGGUC-GCUuaGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.