miRNA display CGI


Results 1 - 20 of 113 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19234 5' -59.7 NC_004684.1 + 452 0.69 0.377052
Target:  5'- cUGCGCGcaucGUG-GCcguggacaaccGGGCCAGCGAgGUCGg -3'
miRNA:   3'- -ACGCGC----CACgCG-----------UCCGGUCGCU-UAGC- -5'
19234 5' -59.7 NC_004684.1 + 528 0.7 0.320776
Target:  5'- gGCGCuGacGUGCuGGCCAGCGcGGUCGa -3'
miRNA:   3'- aCGCGcCa-CGCGuCCGGUCGC-UUAGC- -5'
19234 5' -59.7 NC_004684.1 + 4433 0.66 0.538197
Target:  5'- cGCGCGGgccugcugGCGCagcuggAGGCCGcacgugcgcGCGAggccGUCGu -3'
miRNA:   3'- aCGCGCCa-------CGCG------UCCGGU---------CGCU----UAGC- -5'
19234 5' -59.7 NC_004684.1 + 5031 0.75 0.142527
Target:  5'- cGCGacgacgaGGUGCGCAGGCUGGCGcg-CGc -3'
miRNA:   3'- aCGCg------CCACGCGUCCGGUCGCuuaGC- -5'
19234 5' -59.7 NC_004684.1 + 5782 0.72 0.221987
Target:  5'- aGCGCGcuacUGCGcCAGGCguGCGAgGUCGg -3'
miRNA:   3'- aCGCGCc---ACGC-GUCCGguCGCU-UAGC- -5'
19234 5' -59.7 NC_004684.1 + 5784 0.77 0.105938
Target:  5'- gUGCGUGGUGUGCGGGCgGGaCGccUCGa -3'
miRNA:   3'- -ACGCGCCACGCGUCCGgUC-GCuuAGC- -5'
19234 5' -59.7 NC_004684.1 + 6377 0.67 0.46817
Target:  5'- cUGCGCGuUGCGCAGcguGUUGGCGaAGUUGg -3'
miRNA:   3'- -ACGCGCcACGCGUC---CGGUCGC-UUAGC- -5'
19234 5' -59.7 NC_004684.1 + 7581 0.66 0.538197
Target:  5'- gUGCGgcUGGUGCGCGGcaacCCGGUG-GUCGu -3'
miRNA:   3'- -ACGC--GCCACGCGUCc---GGUCGCuUAGC- -5'
19234 5' -59.7 NC_004684.1 + 7651 0.71 0.277737
Target:  5'- gGCGUGGUGaC-CGGGUCGGCGGccuacGUCGu -3'
miRNA:   3'- aCGCGCCAC-GcGUCCGGUCGCU-----UAGC- -5'
19234 5' -59.7 NC_004684.1 + 7856 0.66 0.504656
Target:  5'- cGCGCuGGcggugcaggaccugUGCGCAGGCCuaCGAcgCGc -3'
miRNA:   3'- aCGCG-CC--------------ACGCGUCCGGucGCUuaGC- -5'
19234 5' -59.7 NC_004684.1 + 8137 0.69 0.336191
Target:  5'- cGCGuCGGUGCuCGGGUgCAGCaGAUCGu -3'
miRNA:   3'- aCGC-GCCACGcGUCCG-GUCGcUUAGC- -5'
19234 5' -59.7 NC_004684.1 + 8182 0.66 0.517768
Target:  5'- gGCGCGcUGgGcCAGGCgCAGCuGAUCa -3'
miRNA:   3'- aCGCGCcACgC-GUCCG-GUCGcUUAGc -5'
19234 5' -59.7 NC_004684.1 + 8316 0.68 0.428463
Target:  5'- gGCGCugacgccggaagaGGUGCGC--GCCAGCGAgaagaaaacaaucAUCGa -3'
miRNA:   3'- aCGCG-------------CCACGCGucCGGUCGCU-------------UAGC- -5'
19234 5' -59.7 NC_004684.1 + 8482 0.66 0.50767
Target:  5'- gGCGgGGUgGgGCGGGgaCGGCGAGaCGg -3'
miRNA:   3'- aCGCgCCA-CgCGUCCg-GUCGCUUaGC- -5'
19234 5' -59.7 NC_004684.1 + 8528 0.72 0.227678
Target:  5'- gGCGUGcUGUGCGGGCCGGaCGAggUGg -3'
miRNA:   3'- aCGCGCcACGCGUCCGGUC-GCUuaGC- -5'
19234 5' -59.7 NC_004684.1 + 8921 0.71 0.251684
Target:  5'- gGCGCGGcaaguucGCGCuGGCCucAGCGGgcaGUCGg -3'
miRNA:   3'- aCGCGCCa------CGCGuCCGG--UCGCU---UAGC- -5'
19234 5' -59.7 NC_004684.1 + 9016 0.71 0.264451
Target:  5'- cGCGCGGUGCcguGCGGGgCGGCaaccGGcgCGg -3'
miRNA:   3'- aCGCGCCACG---CGUCCgGUCG----CUuaGC- -5'
19234 5' -59.7 NC_004684.1 + 9324 0.7 0.320776
Target:  5'- cUGCaCGGUGCGCAcGGUCAGC---UCGu -3'
miRNA:   3'- -ACGcGCCACGCGU-CCGGUCGcuuAGC- -5'
19234 5' -59.7 NC_004684.1 + 9918 0.69 0.377052
Target:  5'- uUGuCGaCGGUGgGCAGGaCCGGCaGuuuGUCGg -3'
miRNA:   3'- -AC-GC-GCCACgCGUCC-GGUCG-Cu--UAGC- -5'
19234 5' -59.7 NC_004684.1 + 10255 0.67 0.438672
Target:  5'- cGCGUGGaGCGgGccaaccaacuGGCCAGCGAcgccgguGUCGc -3'
miRNA:   3'- aCGCGCCaCGCgU----------CCGGUCGCU-------UAGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.