miRNA display CGI


Results 1 - 20 of 104 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19238 3' -58.7 NC_004684.1 + 9138 0.66 0.554963
Target:  5'- uUCGaccGCCUcgGCGCGGCagGUGCGGCAa -3'
miRNA:   3'- -AGCac-CGGGa-CGUGUUG--CACGCCGUg -5'
19238 3' -58.7 NC_004684.1 + 25209 0.66 0.554963
Target:  5'- ---cGGCCCacUGCuCAccgcGCaGUGCGGCGCu -3'
miRNA:   3'- agcaCCGGG--ACGuGU----UG-CACGCCGUG- -5'
19238 3' -58.7 NC_004684.1 + 58770 0.66 0.565472
Target:  5'- -gGUGGCUgcaCUGCGCAcaGUGUGGgGCc -3'
miRNA:   3'- agCACCGG---GACGUGUugCACGCCgUG- -5'
19238 3' -58.7 NC_004684.1 + 16868 0.66 0.534125
Target:  5'- -gGUGGCCaguguCUGCGCcg-GUGUGGUGCa -3'
miRNA:   3'- agCACCGG-----GACGUGuugCACGCCGUG- -5'
19238 3' -58.7 NC_004684.1 + 3445 0.66 0.554963
Target:  5'- cCGUGGCCaugugGUACGGCacccaGUuCGGCGCg -3'
miRNA:   3'- aGCACCGGga---CGUGUUG-----CAcGCCGUG- -5'
19238 3' -58.7 NC_004684.1 + 42854 0.66 0.534125
Target:  5'- aUCGcGGCCCgGCACAccgcCGUaGaUGGCACc -3'
miRNA:   3'- -AGCaCCGGGaCGUGUu---GCA-C-GCCGUG- -5'
19238 3' -58.7 NC_004684.1 + 15680 0.66 0.576032
Target:  5'- gUCGUGGCCagcggcgGCAcCGACGccacCGGCAUc -3'
miRNA:   3'- -AGCACCGGga-----CGU-GUUGCac--GCCGUG- -5'
19238 3' -58.7 NC_004684.1 + 42894 0.66 0.544511
Target:  5'- gCGcGGCCCUGCGgCAcCGccccgGCGGUAg -3'
miRNA:   3'- aGCaCCGGGACGU-GUuGCa----CGCCGUg -5'
19238 3' -58.7 NC_004684.1 + 5234 0.66 0.534125
Target:  5'- aCGcGaGCCCUGCGCAAgGccgGGCACg -3'
miRNA:   3'- aGCaC-CGGGACGUGUUgCacgCCGUG- -5'
19238 3' -58.7 NC_004684.1 + 28118 0.66 0.576032
Target:  5'- uUCGaGGCCUUGCugGugGccUGCacGCACg -3'
miRNA:   3'- -AGCaCCGGGACGugUugC--ACGc-CGUG- -5'
19238 3' -58.7 NC_004684.1 + 52753 0.66 0.565472
Target:  5'- gUCGUGGCCgCUgGCGCAGuCGUugacGCccuccucguagaGGCGCu -3'
miRNA:   3'- -AGCACCGG-GA-CGUGUU-GCA----CG------------CCGUG- -5'
19238 3' -58.7 NC_004684.1 + 16425 0.66 0.544511
Target:  5'- -gGUcGGCCU---ACGACGUGCuGGCGCa -3'
miRNA:   3'- agCA-CCGGGacgUGUUGCACG-CCGUG- -5'
19238 3' -58.7 NC_004684.1 + 41048 0.66 0.554963
Target:  5'- aCGgaaUGGCCgaGCGCAccGCGU-CGGCAa -3'
miRNA:   3'- aGC---ACCGGgaCGUGU--UGCAcGCCGUg -5'
19238 3' -58.7 NC_004684.1 + 52202 0.66 0.590888
Target:  5'- uUUGUuGCCgCUGCGCAgcaccagucccagguGCGUGgCGGCGg -3'
miRNA:   3'- -AGCAcCGG-GACGUGU---------------UGCAC-GCCGUg -5'
19238 3' -58.7 NC_004684.1 + 12759 0.66 0.586636
Target:  5'- cUCuUGGCCC-GCGCGgcuGCGccUGCGGC-Ca -3'
miRNA:   3'- -AGcACCGGGaCGUGU---UGC--ACGCCGuG- -5'
19238 3' -58.7 NC_004684.1 + 460 0.66 0.586636
Target:  5'- aUCGUGGCCgUGgACAACcgggccagcgagGU-CGGCAg -3'
miRNA:   3'- -AGCACCGGgACgUGUUG------------CAcGCCGUg -5'
19238 3' -58.7 NC_004684.1 + 9027 0.66 0.565472
Target:  5'- aUCGa--CCCUaaugcGUACGugGUGUGGCACg -3'
miRNA:   3'- -AGCaccGGGA-----CGUGUugCACGCCGUG- -5'
19238 3' -58.7 NC_004684.1 + 59931 0.66 0.586636
Target:  5'- gUCGguguccGGCCCcacgUGCGCGuUGUgcugGCGGCGCu -3'
miRNA:   3'- -AGCa-----CCGGG----ACGUGUuGCA----CGCCGUG- -5'
19238 3' -58.7 NC_004684.1 + 40052 0.66 0.564418
Target:  5'- cUCGcacGGCUCucgucguUGguCAGCGUGCGGuCGCa -3'
miRNA:   3'- -AGCa--CCGGG-------ACguGUUGCACGCC-GUG- -5'
19238 3' -58.7 NC_004684.1 + 23765 0.66 0.554963
Target:  5'- uUCG-GGCCgugggGCGCGGCGUugGGCGCg -3'
miRNA:   3'- -AGCaCCGGga---CGUGUUGCAcgCCGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.