miRNA display CGI


Results 1 - 20 of 104 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19238 3' -58.7 NC_004684.1 + 201 0.67 0.493348
Target:  5'- -gGUGGCCCUG-GCAACGcUGa-GCACc -3'
miRNA:   3'- agCACCGGGACgUGUUGC-ACgcCGUG- -5'
19238 3' -58.7 NC_004684.1 + 460 0.66 0.586636
Target:  5'- aUCGUGGCCgUGgACAACcgggccagcgagGU-CGGCAg -3'
miRNA:   3'- -AGCACCGGgACgUGUUG------------CAcGCCGUg -5'
19238 3' -58.7 NC_004684.1 + 805 0.68 0.425733
Target:  5'- ---aGGUCgUGCGCGACGgcaagaucgUGUGGCGCa -3'
miRNA:   3'- agcaCCGGgACGUGUUGC---------ACGCCGUG- -5'
19238 3' -58.7 NC_004684.1 + 2063 0.68 0.435059
Target:  5'- aUCGUGGCCUgccugGCGCuggcCGUG-GuGCACa -3'
miRNA:   3'- -AGCACCGGGa----CGUGuu--GCACgC-CGUG- -5'
19238 3' -58.7 NC_004684.1 + 2518 0.7 0.347469
Target:  5'- aCGacGCCCgGCACugcgGACGcUGCGGCACc -3'
miRNA:   3'- aGCacCGGGaCGUG----UUGC-ACGCCGUG- -5'
19238 3' -58.7 NC_004684.1 + 2974 0.71 0.280041
Target:  5'- aUCG-GuGCCCUGgACGGCG-GgGGCGCa -3'
miRNA:   3'- -AGCaC-CGGGACgUGUUGCaCgCCGUG- -5'
19238 3' -58.7 NC_004684.1 + 3445 0.66 0.554963
Target:  5'- cCGUGGCCaugugGUACGGCacccaGUuCGGCGCg -3'
miRNA:   3'- aGCACCGGga---CGUGUUG-----CAcGCCGUG- -5'
19238 3' -58.7 NC_004684.1 + 3548 0.7 0.363945
Target:  5'- aCGUGGCaCCg--ACAGCGUGCGccGCGCc -3'
miRNA:   3'- aGCACCG-GGacgUGUUGCACGC--CGUG- -5'
19238 3' -58.7 NC_004684.1 + 5234 0.66 0.534125
Target:  5'- aCGcGaGCCCUGCGCAAgGccgGGCACg -3'
miRNA:   3'- aGCaC-CGGGACGUGUUgCacgCCGUG- -5'
19238 3' -58.7 NC_004684.1 + 5690 0.67 0.471535
Target:  5'- cCGgGGCCCggccugcccacgGCACcgacgccaauGGCGUGCaGGCGCa -3'
miRNA:   3'- aGCaCCGGGa-----------CGUG----------UUGCACG-CCGUG- -5'
19238 3' -58.7 NC_004684.1 + 6149 0.7 0.347469
Target:  5'- --aUGGCCCUGCuguucaaugGCGAgGUGUGGCu- -3'
miRNA:   3'- agcACCGGGACG---------UGUUgCACGCCGug -5'
19238 3' -58.7 NC_004684.1 + 6369 0.72 0.266546
Target:  5'- gCGaUGGCCUgcgcguUGCGCAGCGUGuUGGCGa -3'
miRNA:   3'- aGC-ACCGGG------ACGUGUUGCAC-GCCGUg -5'
19238 3' -58.7 NC_004684.1 + 6682 0.67 0.500386
Target:  5'- -aGUGG-CCUGCACAGgucgaccuggccacCGU-CGGCGCg -3'
miRNA:   3'- agCACCgGGACGUGUU--------------GCAcGCCGUG- -5'
19238 3' -58.7 NC_004684.1 + 9027 0.66 0.565472
Target:  5'- aUCGa--CCCUaaugcGUACGugGUGUGGCACg -3'
miRNA:   3'- -AGCaccGGGA-----CGUGUugCACGCCGUG- -5'
19238 3' -58.7 NC_004684.1 + 9138 0.66 0.554963
Target:  5'- uUCGaccGCCUcgGCGCGGCagGUGCGGCAa -3'
miRNA:   3'- -AGCac-CGGGa-CGUGUUG--CACGCCGUg -5'
19238 3' -58.7 NC_004684.1 + 9795 0.72 0.253582
Target:  5'- cCGaGGCCCUGCGC--CG-GUGGCACc -3'
miRNA:   3'- aGCaCCGGGACGUGuuGCaCGCCGUG- -5'
19238 3' -58.7 NC_004684.1 + 9884 0.73 0.234517
Target:  5'- cUCG-GGaUCCgGCGCAggcaccuGCGUGCGGCGCu -3'
miRNA:   3'- -AGCaCC-GGGaCGUGU-------UGCACGCCGUG- -5'
19238 3' -58.7 NC_004684.1 + 10646 0.66 0.565472
Target:  5'- cCGUGGUCUggUGC-CGGuuccCGUGCuGGCGCg -3'
miRNA:   3'- aGCACCGGG--ACGuGUU----GCACG-CCGUG- -5'
19238 3' -58.7 NC_004684.1 + 11383 0.67 0.513571
Target:  5'- gCGUGGUggUGCGCGACuUGCcGCGCg -3'
miRNA:   3'- aGCACCGggACGUGUUGcACGcCGUG- -5'
19238 3' -58.7 NC_004684.1 + 12277 0.67 0.483374
Target:  5'- aUCGaGGCCCgugcUGCGCAGCGcGCcaacgguggaGGUACg -3'
miRNA:   3'- -AGCaCCGGG----ACGUGUUGCaCG----------CCGUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.