miRNA display CGI


Results 1 - 20 of 104 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19238 3' -58.7 NC_004684.1 + 2518 0.7 0.347469
Target:  5'- aCGacGCCCgGCACugcgGACGcUGCGGCACc -3'
miRNA:   3'- aGCacCGGGaCGUG----UUGC-ACGCCGUG- -5'
19238 3' -58.7 NC_004684.1 + 25316 0.72 0.273227
Target:  5'- uUCGUcGGCCCUG-GCGGCGUaugGCGGCc- -3'
miRNA:   3'- -AGCA-CCGGGACgUGUUGCA---CGCCGug -5'
19238 3' -58.7 NC_004684.1 + 22291 0.71 0.294074
Target:  5'- ---aGGCCC-GCGCGGCG-GCGGUGCc -3'
miRNA:   3'- agcaCCGGGaCGUGUUGCaCGCCGUG- -5'
19238 3' -58.7 NC_004684.1 + 17263 0.71 0.301293
Target:  5'- gCGcUGGUCCUGCAacuGCucgGCGGCGCu -3'
miRNA:   3'- aGC-ACCGGGACGUgu-UGca-CGCCGUG- -5'
19238 3' -58.7 NC_004684.1 + 26444 0.71 0.31614
Target:  5'- -gGUGGCCCgGUgu-ACG-GCGGCACg -3'
miRNA:   3'- agCACCGGGaCGuguUGCaCGCCGUG- -5'
19238 3' -58.7 NC_004684.1 + 48013 0.71 0.319175
Target:  5'- gCGUcaGGCCCUGCuccgggaaccgcugcGCGAUcagGCGGCGCa -3'
miRNA:   3'- aGCA--CCGGGACG---------------UGUUGca-CGCCGUG- -5'
19238 3' -58.7 NC_004684.1 + 17540 0.71 0.319175
Target:  5'- aCGUGGUcgccuaccaggaccgCCUGgACGAgGUGCGcGCACu -3'
miRNA:   3'- aGCACCG---------------GGACgUGUUgCACGC-CGUG- -5'
19238 3' -58.7 NC_004684.1 + 30415 0.7 0.323768
Target:  5'- cCGUGGCaacaCCUGUuCGACG-GCGGCGu -3'
miRNA:   3'- aGCACCG----GGACGuGUUGCaCGCCGUg -5'
19238 3' -58.7 NC_004684.1 + 33094 0.7 0.347469
Target:  5'- gCGUGGCgCUGC-CGACGca-GGCGCu -3'
miRNA:   3'- aGCACCGgGACGuGUUGCacgCCGUG- -5'
19238 3' -58.7 NC_004684.1 + 44234 0.72 0.266546
Target:  5'- uUCG-GGCaCCUGCucCAGCGUGaccauGGCGCa -3'
miRNA:   3'- -AGCaCCG-GGACGu-GUUGCACg----CCGUG- -5'
19238 3' -58.7 NC_004684.1 + 23700 0.72 0.266546
Target:  5'- gCGUGGCCUccaacCugGGCG-GCGGCGCg -3'
miRNA:   3'- aGCACCGGGac---GugUUGCaCGCCGUG- -5'
19238 3' -58.7 NC_004684.1 + 6369 0.72 0.266546
Target:  5'- gCGaUGGCCUgcgcguUGCGCAGCGUGuUGGCGa -3'
miRNA:   3'- aGC-ACCGGG------ACGUGUUGCAC-GCCGUg -5'
19238 3' -58.7 NC_004684.1 + 65430 0.79 0.08031
Target:  5'- ---aGGCgCUGCGCuGGCGUGCGGCGCg -3'
miRNA:   3'- agcaCCGgGACGUG-UUGCACGCCGUG- -5'
19238 3' -58.7 NC_004684.1 + 56154 0.79 0.084911
Target:  5'- gCGUGGCCCUgGCcgACGACGgcgacgacgGCGGCGCu -3'
miRNA:   3'- aGCACCGGGA-CG--UGUUGCa--------CGCCGUG- -5'
19238 3' -58.7 NC_004684.1 + 39438 0.77 0.121481
Target:  5'- cCGUGGCCCcagGCcgaGGCGUGCGGCuACc -3'
miRNA:   3'- aGCACCGGGa--CGug-UUGCACGCCG-UG- -5'
19238 3' -58.7 NC_004684.1 + 34995 0.74 0.181575
Target:  5'- ---aGGCCgUGCugAuccgggugacGCGUGCGGCGCg -3'
miRNA:   3'- agcaCCGGgACGugU----------UGCACGCCGUG- -5'
19238 3' -58.7 NC_004684.1 + 41923 0.74 0.20052
Target:  5'- aUCGUGGCCgUGaccaaggcgguCAACG-GCGGCACc -3'
miRNA:   3'- -AGCACCGGgACgu---------GUUGCaCGCCGUG- -5'
19238 3' -58.7 NC_004684.1 + 22328 0.73 0.206851
Target:  5'- cCGUGGCCCgccacccgGUACAgGCGgugGCGGCGg -3'
miRNA:   3'- aGCACCGGGa-------CGUGU-UGCa--CGCCGUg -5'
19238 3' -58.7 NC_004684.1 + 58346 0.72 0.253582
Target:  5'- -gGUGGCCCUGCugG-CGuUGCcGCGCc -3'
miRNA:   3'- agCACCGGGACGugUuGC-ACGcCGUG- -5'
19238 3' -58.7 NC_004684.1 + 9795 0.72 0.253582
Target:  5'- cCGaGGCCCUGCGC--CG-GUGGCACc -3'
miRNA:   3'- aGCaCCGGGACGUGuuGCaCGCCGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.