miRNA display CGI


Results 1 - 20 of 104 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19238 3' -58.7 NC_004684.1 + 54880 0.98 0.003309
Target:  5'- gUCGUGGCCCU-CACAACGUGCGGCACg -3'
miRNA:   3'- -AGCACCGGGAcGUGUUGCACGCCGUG- -5'
19238 3' -58.7 NC_004684.1 + 19849 0.84 0.039648
Target:  5'- aUCGUGGCCCUGCGCGAUGcGCucaGCGCa -3'
miRNA:   3'- -AGCACCGGGACGUGUUGCaCGc--CGUG- -5'
19238 3' -58.7 NC_004684.1 + 65430 0.79 0.08031
Target:  5'- ---aGGCgCUGCGCuGGCGUGCGGCGCg -3'
miRNA:   3'- agcaCCGgGACGUG-UUGCACGCCGUG- -5'
19238 3' -58.7 NC_004684.1 + 56154 0.79 0.084911
Target:  5'- gCGUGGCCCUgGCcgACGACGgcgacgacgGCGGCGCu -3'
miRNA:   3'- aGCACCGGGA-CG--UGUUGCa--------CGCCGUG- -5'
19238 3' -58.7 NC_004684.1 + 39438 0.77 0.121481
Target:  5'- cCGUGGCCCcagGCcgaGGCGUGCGGCuACc -3'
miRNA:   3'- aGCACCGGGa--CGug-UUGCACGCCG-UG- -5'
19238 3' -58.7 NC_004684.1 + 30234 0.75 0.165984
Target:  5'- aCGUGGCCCUcgGCGCGcucccagaacugGCGgcgcagugcgcugGCGGCACg -3'
miRNA:   3'- aGCACCGGGA--CGUGU------------UGCa------------CGCCGUG- -5'
19238 3' -58.7 NC_004684.1 + 34995 0.74 0.181575
Target:  5'- ---aGGCCgUGCugAuccgggugacGCGUGCGGCGCg -3'
miRNA:   3'- agcaCCGGgACGugU----------UGCACGCCGUG- -5'
19238 3' -58.7 NC_004684.1 + 41923 0.74 0.20052
Target:  5'- aUCGUGGCCgUGaccaaggcgguCAACG-GCGGCACc -3'
miRNA:   3'- -AGCACCGGgACgu---------GUUGCaCGCCGUG- -5'
19238 3' -58.7 NC_004684.1 + 22328 0.73 0.206851
Target:  5'- cCGUGGCCCgccacccgGUACAgGCGgugGCGGCGg -3'
miRNA:   3'- aGCACCGGGa-------CGUGU-UGCa--CGCCGUg -5'
19238 3' -58.7 NC_004684.1 + 9884 0.73 0.234517
Target:  5'- cUCG-GGaUCCgGCGCAggcaccuGCGUGCGGCGCu -3'
miRNA:   3'- -AGCaCC-GGGaCGUGU-------UGCACGCCGUG- -5'
19238 3' -58.7 NC_004684.1 + 56993 0.72 0.246055
Target:  5'- gCGUGGUUCUGCACGcugGCGgccugguacccgGCGGUGCg -3'
miRNA:   3'- aGCACCGGGACGUGU---UGCa-----------CGCCGUG- -5'
19238 3' -58.7 NC_004684.1 + 58346 0.72 0.253582
Target:  5'- -gGUGGCCCUGCugG-CGuUGCcGCGCc -3'
miRNA:   3'- agCACCGGGACGugUuGC-ACGcCGUG- -5'
19238 3' -58.7 NC_004684.1 + 9795 0.72 0.253582
Target:  5'- cCGaGGCCCUGCGC--CG-GUGGCACc -3'
miRNA:   3'- aGCaCCGGGACGUGuuGCaCGCCGUG- -5'
19238 3' -58.7 NC_004684.1 + 52681 0.72 0.259998
Target:  5'- gCGUGGCCCcGUACAGgcCcUGCGGCGa -3'
miRNA:   3'- aGCACCGGGaCGUGUU--GcACGCCGUg -5'
19238 3' -58.7 NC_004684.1 + 23700 0.72 0.266546
Target:  5'- gCGUGGCCUccaacCugGGCG-GCGGCGCg -3'
miRNA:   3'- aGCACCGGGac---GugUUGCaCGCCGUG- -5'
19238 3' -58.7 NC_004684.1 + 44234 0.72 0.266546
Target:  5'- uUCG-GGCaCCUGCucCAGCGUGaccauGGCGCa -3'
miRNA:   3'- -AGCaCCG-GGACGu-GUUGCACg----CCGUG- -5'
19238 3' -58.7 NC_004684.1 + 6369 0.72 0.266546
Target:  5'- gCGaUGGCCUgcgcguUGCGCAGCGUGuUGGCGa -3'
miRNA:   3'- aGC-ACCGGG------ACGUGUUGCAC-GCCGUg -5'
19238 3' -58.7 NC_004684.1 + 25316 0.72 0.273227
Target:  5'- uUCGUcGGCCCUG-GCGGCGUaugGCGGCc- -3'
miRNA:   3'- -AGCA-CCGGGACgUGUUGCA---CGCCGug -5'
19238 3' -58.7 NC_004684.1 + 2974 0.71 0.280041
Target:  5'- aUCG-GuGCCCUGgACGGCG-GgGGCGCa -3'
miRNA:   3'- -AGCaC-CGGGACgUGUUGCaCgCCGUG- -5'
19238 3' -58.7 NC_004684.1 + 22291 0.71 0.294074
Target:  5'- ---aGGCCC-GCGCGGCG-GCGGUGCc -3'
miRNA:   3'- agcaCCGGGaCGUGUUGCaCGCCGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.