miRNA display CGI


Results 1 - 20 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19238 5' -55.7 NC_004684.1 + 66357 0.66 0.761296
Target:  5'- gGGcGGCCaGGGCGaCGCGgguguuGGGGGUGa -3'
miRNA:   3'- aCCaCCGG-CUCGCaGCGU------UUCUCACg -5'
19238 5' -55.7 NC_004684.1 + 4186 0.66 0.760286
Target:  5'- cGGUGGCCGAGaagauggggcCGUucggcCGCGucGAGUcgacccgGCg -3'
miRNA:   3'- aCCACCGGCUC----------GCA-----GCGUuuCUCA-------CG- -5'
19238 5' -55.7 NC_004684.1 + 51408 0.66 0.740875
Target:  5'- ---cGGCCGGGCGUC-CuuGGGGaacUGCu -3'
miRNA:   3'- accaCCGGCUCGCAGcGuuUCUC---ACG- -5'
19238 5' -55.7 NC_004684.1 + 43629 0.66 0.740875
Target:  5'- gGuGUGGCCGAGCG-CGguGAGuucGUc -3'
miRNA:   3'- aC-CACCGGCUCGCaGCguUUCucaCG- -5'
19238 5' -55.7 NC_004684.1 + 24932 0.66 0.740874
Target:  5'- aGGUGGCCaggaacgacaGAGCGgCGCGAuGAccGCc -3'
miRNA:   3'- aCCACCGG----------CUCGCaGCGUUuCUcaCG- -5'
19238 5' -55.7 NC_004684.1 + 43007 0.66 0.739842
Target:  5'- aGGUGG--GGGCGUUGCuuugugcccggucAGAGGGUGUu -3'
miRNA:   3'- aCCACCggCUCGCAGCG-------------UUUCUCACG- -5'
19238 5' -55.7 NC_004684.1 + 36604 0.66 0.730499
Target:  5'- cUGGUGGCCcccgguGAGaCGUuccaggcaCGCGuGGAGcUGCg -3'
miRNA:   3'- -ACCACCGG------CUC-GCA--------GCGUuUCUC-ACG- -5'
19238 5' -55.7 NC_004684.1 + 5250 0.66 0.730498
Target:  5'- ---aGGCCGGGCacgGCGAGGcGUGCa -3'
miRNA:   3'- accaCCGGCUCGcagCGUUUCuCACG- -5'
19238 5' -55.7 NC_004684.1 + 27842 0.66 0.720026
Target:  5'- cUGGgcaCCGAGCGcgcugUGCAcgcAGGAGUGCc -3'
miRNA:   3'- -ACCaccGGCUCGCa----GCGU---UUCUCACG- -5'
19238 5' -55.7 NC_004684.1 + 27804 0.66 0.720026
Target:  5'- gUGGUGGcCCGAGCa--GCuguuGAGGGcgGCc -3'
miRNA:   3'- -ACCACC-GGCUCGcagCGu---UUCUCa-CG- -5'
19238 5' -55.7 NC_004684.1 + 52472 0.66 0.713702
Target:  5'- cGGcaUGGCCGccaccaccuccagcGCGUUGCGAccGGuGUGCa -3'
miRNA:   3'- aCC--ACCGGCu-------------CGCAGCGUU--UCuCACG- -5'
19238 5' -55.7 NC_004684.1 + 51541 0.66 0.70947
Target:  5'- aGGUaGCCGAGCaccuuGUCGCucugcgccAGUGCg -3'
miRNA:   3'- aCCAcCGGCUCG-----CAGCGuuuc----UCACG- -5'
19238 5' -55.7 NC_004684.1 + 45689 0.67 0.698839
Target:  5'- gGGUaGGCCGAGCcaugaccacgguGUCGCAcaucGGGaAGUcgGCa -3'
miRNA:   3'- aCCA-CCGGCUCG------------CAGCGU----UUC-UCA--CG- -5'
19238 5' -55.7 NC_004684.1 + 53588 0.67 0.698839
Target:  5'- aUGGUGGCguugCGGGCGacacCGCGcuGGAG-GCg -3'
miRNA:   3'- -ACCACCG----GCUCGCa---GCGUu-UCUCaCG- -5'
19238 5' -55.7 NC_004684.1 + 37543 0.67 0.6774
Target:  5'- aUGGUGaCCG-GCG-CGUu-GGGGUGCa -3'
miRNA:   3'- -ACCACcGGCuCGCaGCGuuUCUCACG- -5'
19238 5' -55.7 NC_004684.1 + 40716 0.67 0.6774
Target:  5'- cGGUGGCCGGGaCGaccagCGCGgcGGGg-- -3'
miRNA:   3'- aCCACCGGCUC-GCa----GCGUuuCUCacg -5'
19238 5' -55.7 NC_004684.1 + 8069 0.67 0.666612
Target:  5'- -cGUGGCCGAGUGgccaauCGAGGAGcGCc -3'
miRNA:   3'- acCACCGGCUCGCagc---GUUUCUCaCG- -5'
19238 5' -55.7 NC_004684.1 + 46909 0.67 0.666612
Target:  5'- aUGGUG-UCGAGUccgacGUUGCGcuuGGGGGUGCg -3'
miRNA:   3'- -ACCACcGGCUCG-----CAGCGU---UUCUCACG- -5'
19238 5' -55.7 NC_004684.1 + 67252 0.67 0.655793
Target:  5'- cGGcguuuccgGGCUG-GCGUCGCugaacacGGGUGCa -3'
miRNA:   3'- aCCa-------CCGGCuCGCAGCGuuu----CUCACG- -5'
19238 5' -55.7 NC_004684.1 + 60084 0.67 0.655793
Target:  5'- cGGccaUGGCCGGGU-UCGCGuGGugcAGUGCg -3'
miRNA:   3'- aCC---ACCGGCUCGcAGCGUuUC---UCACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.