miRNA display CGI


Results 1 - 20 of 232 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19239 5' -56.2 NC_004684.1 + 62939 0.66 0.694181
Target:  5'- -cCGACCAgCGcGCggcgCGCGCCGacgaUGGUg -3'
miRNA:   3'- cuGUUGGU-GCuUGa---GCGCGGCg---ACCG- -5'
19239 5' -56.2 NC_004684.1 + 13599 0.66 0.746351
Target:  5'- cGCAACC-CGAucccaGCGCCGCgccGGUc -3'
miRNA:   3'- cUGUUGGuGCUugag-CGCGGCGa--CCG- -5'
19239 5' -56.2 NC_004684.1 + 51813 0.66 0.725741
Target:  5'- cACGGCCA--GGC-CGCGCgCGCUGcGCu -3'
miRNA:   3'- cUGUUGGUgcUUGaGCGCG-GCGAC-CG- -5'
19239 5' -56.2 NC_004684.1 + 18265 0.66 0.704773
Target:  5'- cGGCAACggCACGcccGGC-CGC-CUGCUGGCa -3'
miRNA:   3'- -CUGUUG--GUGC---UUGaGCGcGGCGACCG- -5'
19239 5' -56.2 NC_004684.1 + 36212 0.66 0.725741
Target:  5'- uGCAGCUGCGcAGCguggccacCGCcgagaCCGCUGGCg -3'
miRNA:   3'- cUGUUGGUGC-UUGa-------GCGc----GGCGACCG- -5'
19239 5' -56.2 NC_004684.1 + 40164 0.66 0.704773
Target:  5'- gGACGGCCuugcuggcgGCGaAGCUCauGCGCUGCUcGCu -3'
miRNA:   3'- -CUGUUGG---------UGC-UUGAG--CGCGGCGAcCG- -5'
19239 5' -56.2 NC_004684.1 + 44673 0.66 0.725741
Target:  5'- uGCGGCgGCGcgauGC-CGaUGUCGCUGGCg -3'
miRNA:   3'- cUGUUGgUGCu---UGaGC-GCGGCGACCG- -5'
19239 5' -56.2 NC_004684.1 + 26424 0.66 0.704773
Target:  5'- uGGCAGCg--GggUUCGcCGCCGgUGGCc -3'
miRNA:   3'- -CUGUUGgugCuuGAGC-GCGGCgACCG- -5'
19239 5' -56.2 NC_004684.1 + 39664 0.66 0.715297
Target:  5'- cGGCcuCCGCGugcCUCGUGCuCGCgcucGGCc -3'
miRNA:   3'- -CUGuuGGUGCuu-GAGCGCG-GCGa---CCG- -5'
19239 5' -56.2 NC_004684.1 + 7727 0.66 0.704773
Target:  5'- cGugAGCCACcuGAucgguaucGC-CGCGCCGCUGuCg -3'
miRNA:   3'- -CugUUGGUG--CU--------UGaGCGCGGCGACcG- -5'
19239 5' -56.2 NC_004684.1 + 3228 0.66 0.689928
Target:  5'- cGCGAgCACGAcCUCaacgcggagaccaCGCUGCUGGCc -3'
miRNA:   3'- cUGUUgGUGCUuGAGc------------GCGGCGACCG- -5'
19239 5' -56.2 NC_004684.1 + 9224 0.66 0.694181
Target:  5'- gGugGGCCAggaccCGAACcUGCuGCCgacGCUGGCg -3'
miRNA:   3'- -CugUUGGU-----GCUUGaGCG-CGG---CGACCG- -5'
19239 5' -56.2 NC_004684.1 + 62605 0.66 0.715297
Target:  5'- cGGCcACCGCGccgagGCGCuUGCUGGCg -3'
miRNA:   3'- -CUGuUGGUGCuugagCGCG-GCGACCG- -5'
19239 5' -56.2 NC_004684.1 + 20483 0.66 0.704773
Target:  5'- cGCAACguCGGACUCGacaccaucaCGCCGUaUGGUc -3'
miRNA:   3'- cUGUUGguGCUUGAGC---------GCGGCG-ACCG- -5'
19239 5' -56.2 NC_004684.1 + 24599 0.66 0.704773
Target:  5'- uGACGACaGCGGACguggCGCGCaug-GGCg -3'
miRNA:   3'- -CUGUUGgUGCUUGa---GCGCGgcgaCCG- -5'
19239 5' -56.2 NC_004684.1 + 20325 0.66 0.694181
Target:  5'- cGGCGGCCAuCGAGaUCgGCGUCGCccGGUg -3'
miRNA:   3'- -CUGUUGGU-GCUUgAG-CGCGGCGa-CCG- -5'
19239 5' -56.2 NC_004684.1 + 36317 0.66 0.694181
Target:  5'- gGugGACCAacAACUCGCcgguGCCGCagugGGUg -3'
miRNA:   3'- -CugUUGGUgcUUGAGCG----CGGCGa---CCG- -5'
19239 5' -56.2 NC_004684.1 + 31460 0.66 0.715297
Target:  5'- gGACGugucauuuCCGCG----CGCGCUGCUGGUg -3'
miRNA:   3'- -CUGUu-------GGUGCuugaGCGCGGCGACCG- -5'
19239 5' -56.2 NC_004684.1 + 58092 0.66 0.704773
Target:  5'- -uCGACCGgGAg--CGCGCCGagcaUGGCc -3'
miRNA:   3'- cuGUUGGUgCUugaGCGCGGCg---ACCG- -5'
19239 5' -56.2 NC_004684.1 + 63517 0.66 0.704773
Target:  5'- gGGCGGCCugGcgucgcAGCUCGCGg-GCgUGGCg -3'
miRNA:   3'- -CUGUUGGugC------UUGAGCGCggCG-ACCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.