miRNA display CGI


Results 1 - 20 of 232 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19239 5' -56.2 NC_004684.1 + 440 0.78 0.157281
Target:  5'- cGACGGCUgggGCGAGaUCGCGCCGgaGGCc -3'
miRNA:   3'- -CUGUUGG---UGCUUgAGCGCGGCgaCCG- -5'
19239 5' -56.2 NC_004684.1 + 1014 0.7 0.472765
Target:  5'- aGAUuuccACCGCGcAGCUCGCGgCGUggGGCc -3'
miRNA:   3'- -CUGu---UGGUGC-UUGAGCGCgGCGa-CCG- -5'
19239 5' -56.2 NC_004684.1 + 1062 0.66 0.693119
Target:  5'- cGGCGucACCGgGAcguucgagcgcuACUaCGCGCCGCUgccgucgGGCa -3'
miRNA:   3'- -CUGU--UGGUgCU------------UGA-GCGCGGCGA-------CCG- -5'
19239 5' -56.2 NC_004684.1 + 1135 0.67 0.629781
Target:  5'- cGACGGCCACGGcauGCcgggCGUGCCGaccgugcacuUUGGUg -3'
miRNA:   3'- -CUGUUGGUGCU---UGa---GCGCGGC----------GACCG- -5'
19239 5' -56.2 NC_004684.1 + 1271 0.67 0.629781
Target:  5'- cGGCGACCACuucGCcagcacgcgUCGCGuCCGCgaaGGCa -3'
miRNA:   3'- -CUGUUGGUGcu-UG---------AGCGC-GGCGa--CCG- -5'
19239 5' -56.2 NC_004684.1 + 1698 0.66 0.715297
Target:  5'- uGGC-GCgCAuCGAGCgcaagaaGCGCCuGCUGGCg -3'
miRNA:   3'- -CUGuUG-GU-GCUUGag-----CGCGG-CGACCG- -5'
19239 5' -56.2 NC_004684.1 + 2367 0.72 0.360022
Target:  5'- -uCAGCCACGAGgUCGCcuaugGCCacaccaccaacgccGCUGGCg -3'
miRNA:   3'- cuGUUGGUGCUUgAGCG-----CGG--------------CGACCG- -5'
19239 5' -56.2 NC_004684.1 + 2696 0.66 0.740211
Target:  5'- uGGCGGCCGCcaacaugcucgacugGGACguaCGCaagguGCCGCUGcGCg -3'
miRNA:   3'- -CUGUUGGUG---------------CUUGa--GCG-----CGGCGAC-CG- -5'
19239 5' -56.2 NC_004684.1 + 2854 0.71 0.415419
Target:  5'- --gGACCACGggUuccuggUCGCGCCggacgaccuGCUGGUg -3'
miRNA:   3'- cugUUGGUGCuuG------AGCGCGG---------CGACCG- -5'
19239 5' -56.2 NC_004684.1 + 3218 0.68 0.618999
Target:  5'- cGACGugcGCCugGAAgaggUGCGCCGCauccugGGCc -3'
miRNA:   3'- -CUGU---UGGugCUUga--GCGCGGCGa-----CCG- -5'
19239 5' -56.2 NC_004684.1 + 3228 0.66 0.689928
Target:  5'- cGCGAgCACGAcCUCaacgcggagaccaCGCUGCUGGCc -3'
miRNA:   3'- cUGUUgGUGCUuGAGc------------GCGGCGACCG- -5'
19239 5' -56.2 NC_004684.1 + 3762 0.7 0.502897
Target:  5'- cGACcagGACCGCGAACagGCGaaGCUgauGGCg -3'
miRNA:   3'- -CUG---UUGGUGCUUGagCGCggCGA---CCG- -5'
19239 5' -56.2 NC_004684.1 + 3805 0.68 0.597476
Target:  5'- -gUAACCACc-GC-CGCGCCGCgcaGGCc -3'
miRNA:   3'- cuGUUGGUGcuUGaGCGCGGCGa--CCG- -5'
19239 5' -56.2 NC_004684.1 + 3850 0.72 0.39727
Target:  5'- cGACGACCAcacCGAAggCaCGCCGCUGcGCa -3'
miRNA:   3'- -CUGUUGGU---GCUUgaGcGCGGCGAC-CG- -5'
19239 5' -56.2 NC_004684.1 + 3868 0.72 0.36254
Target:  5'- cACGcCCGCGAGCUgCGaCGCCaggccgcccuGCUGGCg -3'
miRNA:   3'- cUGUuGGUGCUUGA-GC-GCGG----------CGACCG- -5'
19239 5' -56.2 NC_004684.1 + 4217 0.7 0.462924
Target:  5'- -cCAGCCACGAcuGCaUGCGCCuGCgcGGCg -3'
miRNA:   3'- cuGUUGGUGCU--UGaGCGCGG-CGa-CCG- -5'
19239 5' -56.2 NC_004684.1 + 4428 0.67 0.640565
Target:  5'- aACAACgCGCGGgccuGCUgGCGCaGCUGGa -3'
miRNA:   3'- cUGUUG-GUGCU----UGAgCGCGgCGACCg -5'
19239 5' -56.2 NC_004684.1 + 4692 0.66 0.746351
Target:  5'- -uCAACC-CGAACgCGCGCaucauuCUGGCc -3'
miRNA:   3'- cuGUUGGuGCUUGaGCGCGgc----GACCG- -5'
19239 5' -56.2 NC_004684.1 + 5027 0.72 0.388389
Target:  5'- --gGACCGCGAcgACgaggUGCGCagGCUGGCg -3'
miRNA:   3'- cugUUGGUGCU--UGa---GCGCGg-CGACCG- -5'
19239 5' -56.2 NC_004684.1 + 5900 0.68 0.612534
Target:  5'- uGGCGGCgGCGcugaUCGCGCacgaccggcuggccgCGCUGGCc -3'
miRNA:   3'- -CUGUUGgUGCuug-AGCGCG---------------GCGACCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.