Results 1 - 20 of 232 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
19239 | 5' | -56.2 | NC_004684.1 | + | 49414 | 0.72 | 0.370169 |
Target: 5'- cACcACCugGAGCUUggacauggucuugGUGCCGUUGGCc -3' miRNA: 3'- cUGuUGGugCUUGAG-------------CGCGGCGACCG- -5' |
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19239 | 5' | -56.2 | NC_004684.1 | + | 18991 | 0.73 | 0.322179 |
Target: 5'- cGGCAAUCuCGGccaGCUCGCGCagguCGCUGGUc -3' miRNA: 3'- -CUGUUGGuGCU---UGAGCGCG----GCGACCG- -5' |
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19239 | 5' | -56.2 | NC_004684.1 | + | 10122 | 0.73 | 0.322179 |
Target: 5'- cGugGACCugGAGaacgccgcugacCUCGUgcucagccagccGCCGCUGGCc -3' miRNA: 3'- -CugUUGGugCUU------------GAGCG------------CGGCGACCG- -5' |
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19239 | 5' | -56.2 | NC_004684.1 | + | 66231 | 0.73 | 0.329976 |
Target: 5'- cGACAACUugGGACUCGUGCacgaucagcgUGCUcagcgcGGCg -3' miRNA: 3'- -CUGUUGGugCUUGAGCGCG----------GCGA------CCG- -5' |
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19239 | 5' | -56.2 | NC_004684.1 | + | 39477 | 0.73 | 0.337111 |
Target: 5'- uGACAgguacACCACGGuCUUGCGCUGCuucuccuUGGCc -3' miRNA: 3'- -CUGU-----UGGUGCUuGAGCGCGGCG-------ACCG- -5' |
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19239 | 5' | -56.2 | NC_004684.1 | + | 11924 | 0.73 | 0.337911 |
Target: 5'- cGACAGCCA-GGGC-CGU-CCGCUGGCc -3' miRNA: 3'- -CUGUUGGUgCUUGaGCGcGGCGACCG- -5' |
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19239 | 5' | -56.2 | NC_004684.1 | + | 58511 | 0.73 | 0.337911 |
Target: 5'- -cCGACUGCGGuccagCGUGCCGUUGGCg -3' miRNA: 3'- cuGUUGGUGCUuga--GCGCGGCGACCG- -5' |
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19239 | 5' | -56.2 | NC_004684.1 | + | 57119 | 0.73 | 0.337911 |
Target: 5'- aGCGACCGCuGGcagcACUgGCGCgGCUGGUu -3' miRNA: 3'- cUGUUGGUG-CU----UGAgCGCGgCGACCG- -5' |
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19239 | 5' | -56.2 | NC_004684.1 | + | 57943 | 0.72 | 0.36254 |
Target: 5'- cGACcGCCuGCGGuGCUCGCuGCgGCUGGUg -3' miRNA: 3'- -CUGuUGG-UGCU-UGAGCG-CGgCGACCG- -5' |
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19239 | 5' | -56.2 | NC_004684.1 | + | 64285 | 0.73 | 0.314521 |
Target: 5'- aGAUGACCGCGcGCagUGCGCC-CUGGCc -3' miRNA: 3'- -CUGUUGGUGCuUGa-GCGCGGcGACCG- -5' |
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19239 | 5' | -56.2 | NC_004684.1 | + | 28266 | 0.73 | 0.314521 |
Target: 5'- -cCAGCCugGuGCgCGagGCCGCUGGCg -3' miRNA: 3'- cuGUUGGugCuUGaGCg-CGGCGACCG- -5' |
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19239 | 5' | -56.2 | NC_004684.1 | + | 61529 | 0.74 | 0.292376 |
Target: 5'- uGACGugCAgGcGCUggCGUGCCGCUGGUu -3' miRNA: 3'- -CUGUugGUgCuUGA--GCGCGGCGACCG- -5' |
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19239 | 5' | -56.2 | NC_004684.1 | + | 11855 | 0.79 | 0.141172 |
Target: 5'- cGGCAACgggUACGAACUCgugGCGgCGCUGGCg -3' miRNA: 3'- -CUGUUG---GUGCUUGAG---CGCgGCGACCG- -5' |
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19239 | 5' | -56.2 | NC_004684.1 | + | 12656 | 0.78 | 0.153104 |
Target: 5'- cGAUGugCGCGAGCU-GCGCuCGCUGGUg -3' miRNA: 3'- -CUGUugGUGCUUGAgCGCG-GCGACCG- -5' |
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19239 | 5' | -56.2 | NC_004684.1 | + | 57552 | 0.77 | 0.199716 |
Target: 5'- cGCGACCGcCGAGCU-GCGCCgGUUGGCc -3' miRNA: 3'- cUGUUGGU-GCUUGAgCGCGG-CGACCG- -5' |
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19239 | 5' | -56.2 | NC_004684.1 | + | 53183 | 0.76 | 0.221595 |
Target: 5'- gGACAGgC-CG-AC-CGCGCCGCUGGCc -3' miRNA: 3'- -CUGUUgGuGCuUGaGCGCGGCGACCG- -5' |
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19239 | 5' | -56.2 | NC_004684.1 | + | 51185 | 0.76 | 0.227375 |
Target: 5'- --gGGCCAUGGACcgCGCGCC-CUGGCc -3' miRNA: 3'- cugUUGGUGCUUGa-GCGCGGcGACCG- -5' |
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19239 | 5' | -56.2 | NC_004684.1 | + | 9532 | 0.75 | 0.245483 |
Target: 5'- -cCGACCGCGAGCUggUGCGCCgGUUGGa -3' miRNA: 3'- cuGUUGGUGCUUGA--GCGCGG-CGACCg -5' |
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19239 | 5' | -56.2 | NC_004684.1 | + | 60788 | 0.75 | 0.245483 |
Target: 5'- uGGCGACCAgGAACUCGCcucGgUGCgUGGCg -3' miRNA: 3'- -CUGUUGGUgCUUGAGCG---CgGCG-ACCG- -5' |
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19239 | 5' | -56.2 | NC_004684.1 | + | 40323 | 0.74 | 0.28527 |
Target: 5'- cGGCAGgCACGAcCUCgGCGCugggcagguCGCUGGCg -3' miRNA: 3'- -CUGUUgGUGCUuGAG-CGCG---------GCGACCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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