miRNA display CGI


Results 1 - 20 of 232 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19239 5' -56.2 NC_004684.1 + 55536 1.1 0.000874
Target:  5'- gGACAACCACGAACUCGCGCCGCUGGCc -3'
miRNA:   3'- -CUGUUGGUGCUUGAGCGCGGCGACCG- -5'
19239 5' -56.2 NC_004684.1 + 11855 0.79 0.141172
Target:  5'- cGGCAACgggUACGAACUCgugGCGgCGCUGGCg -3'
miRNA:   3'- -CUGUUG---GUGCUUGAG---CGCgGCGACCG- -5'
19239 5' -56.2 NC_004684.1 + 12656 0.78 0.153104
Target:  5'- cGAUGugCGCGAGCU-GCGCuCGCUGGUg -3'
miRNA:   3'- -CUGUugGUGCUUGAgCGCG-GCGACCG- -5'
19239 5' -56.2 NC_004684.1 + 440 0.78 0.157281
Target:  5'- cGACGGCUgggGCGAGaUCGCGCCGgaGGCc -3'
miRNA:   3'- -CUGUUGG---UGCUUgAGCGCGGCgaCCG- -5'
19239 5' -56.2 NC_004684.1 + 47337 0.78 0.170435
Target:  5'- cGCGGCCACGAACgcguucacCGCGCUGaUGGCg -3'
miRNA:   3'- cUGUUGGUGCUUGa-------GCGCGGCgACCG- -5'
19239 5' -56.2 NC_004684.1 + 57552 0.77 0.199716
Target:  5'- cGCGACCGcCGAGCU-GCGCCgGUUGGCc -3'
miRNA:   3'- cUGUUGGU-GCUUGAgCGCGG-CGACCG- -5'
19239 5' -56.2 NC_004684.1 + 51348 0.76 0.205003
Target:  5'- --uGGCCACGAugUCGuCGUCGCcgGGCa -3'
miRNA:   3'- cugUUGGUGCUugAGC-GCGGCGa-CCG- -5'
19239 5' -56.2 NC_004684.1 + 53183 0.76 0.221595
Target:  5'- gGACAGgC-CG-AC-CGCGCCGCUGGCc -3'
miRNA:   3'- -CUGUUgGuGCuUGaGCGCGGCGACCG- -5'
19239 5' -56.2 NC_004684.1 + 51185 0.76 0.227375
Target:  5'- --gGGCCAUGGACcgCGCGCC-CUGGCc -3'
miRNA:   3'- cugUUGGUGCUUGa-GCGCGGcGACCG- -5'
19239 5' -56.2 NC_004684.1 + 25480 0.75 0.233282
Target:  5'- cACGGCCACGAugUCGuCGCgGUcGGCc -3'
miRNA:   3'- cUGUUGGUGCUugAGC-GCGgCGaCCG- -5'
19239 5' -56.2 NC_004684.1 + 60788 0.75 0.245483
Target:  5'- uGGCGACCAgGAACUCGCcucGgUGCgUGGCg -3'
miRNA:   3'- -CUGUUGGUgCUUGAGCG---CgGCG-ACCG- -5'
19239 5' -56.2 NC_004684.1 + 9532 0.75 0.245483
Target:  5'- -cCGACCGCGAGCUggUGCGCCgGUUGGa -3'
miRNA:   3'- cuGUUGGUGCUUGA--GCGCGG-CGACCg -5'
19239 5' -56.2 NC_004684.1 + 55578 0.75 0.258208
Target:  5'- gGACAGCgGCGcGCUCGCGCCcuucuccacGgUGGCc -3'
miRNA:   3'- -CUGUUGgUGCuUGAGCGCGG---------CgACCG- -5'
19239 5' -56.2 NC_004684.1 + 26171 0.75 0.264771
Target:  5'- --aGGCCAgcAGCUCGCGCacCGCUGGCg -3'
miRNA:   3'- cugUUGGUgcUUGAGCGCG--GCGACCG- -5'
19239 5' -56.2 NC_004684.1 + 40323 0.74 0.28527
Target:  5'- cGGCAGgCACGAcCUCgGCGCugggcagguCGCUGGCg -3'
miRNA:   3'- -CUGUUgGUGCUuGAG-CGCG---------GCGACCG- -5'
19239 5' -56.2 NC_004684.1 + 61529 0.74 0.292376
Target:  5'- uGACGugCAgGcGCUggCGUGCCGCUGGUu -3'
miRNA:   3'- -CUGUugGUgCuUGA--GCGCGGCGACCG- -5'
19239 5' -56.2 NC_004684.1 + 41339 0.73 0.314521
Target:  5'- --uGGCCuCGAACUCGcCGCC-CUGGCc -3'
miRNA:   3'- cugUUGGuGCUUGAGC-GCGGcGACCG- -5'
19239 5' -56.2 NC_004684.1 + 65038 0.73 0.314521
Target:  5'- uGGCGGCCACGAACUCaGgGCgGCaguccgGGUa -3'
miRNA:   3'- -CUGUUGGUGCUUGAG-CgCGgCGa-----CCG- -5'
19239 5' -56.2 NC_004684.1 + 64285 0.73 0.314521
Target:  5'- aGAUGACCGCGcGCagUGCGCC-CUGGCc -3'
miRNA:   3'- -CUGUUGGUGCuUGa-GCGCGGcGACCG- -5'
19239 5' -56.2 NC_004684.1 + 28266 0.73 0.314521
Target:  5'- -cCAGCCugGuGCgCGagGCCGCUGGCg -3'
miRNA:   3'- cuGUUGGugCuUGaGCg-CGGCGACCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.