miRNA display CGI


Results 1 - 20 of 42 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19240 5' -55.1 NC_004684.1 + 53409 0.66 0.812907
Target:  5'- -gGugGCCGGGcUGGCCUgcgCCGc- -3'
miRNA:   3'- cgUugCGGCCCuACUGGAagaGGCuc -5'
19240 5' -55.1 NC_004684.1 + 31578 0.66 0.812907
Target:  5'- gGCGGCGUCGuGaAUGACCaccgUCgCCGGGg -3'
miRNA:   3'- -CGUUGCGGC-CcUACUGGa---AGaGGCUC- -5'
19240 5' -55.1 NC_004684.1 + 61709 0.66 0.812907
Target:  5'- gGCAG-GCCGGGccccGGCCacCUCCGAc -3'
miRNA:   3'- -CGUUgCGGCCCua--CUGGaaGAGGCUc -5'
19240 5' -55.1 NC_004684.1 + 14146 0.66 0.812907
Target:  5'- aGC-GCGCCGGGAUcACCUaC-CCGuGc -3'
miRNA:   3'- -CGuUGCGGCCCUAcUGGAaGaGGCuC- -5'
19240 5' -55.1 NC_004684.1 + 66293 0.66 0.812907
Target:  5'- aGUuGCGCCGGGucgcGGCCUggUCaCCGAu -3'
miRNA:   3'- -CGuUGCGGCCCua--CUGGA--AGaGGCUc -5'
19240 5' -55.1 NC_004684.1 + 44704 0.66 0.803617
Target:  5'- uGCGcCGCCGGGGccauguccuUGagcgcuucugcgGCCUUCUCCa-- -3'
miRNA:   3'- -CGUuGCGGCCCU---------AC------------UGGAAGAGGcuc -5'
19240 5' -55.1 NC_004684.1 + 38427 0.66 0.794154
Target:  5'- cCGAUGCgGGGGUGACCacgUCcaagguugCCGAc -3'
miRNA:   3'- cGUUGCGgCCCUACUGGa--AGa-------GGCUc -5'
19240 5' -55.1 NC_004684.1 + 60741 0.66 0.794154
Target:  5'- cCGGCGaCCGGG-UGGCCg---CCGGGu -3'
miRNA:   3'- cGUUGC-GGCCCuACUGGaagaGGCUC- -5'
19240 5' -55.1 NC_004684.1 + 2556 0.66 0.784529
Target:  5'- -gAGCGCgCGGa--GGCCUUCgCCGAGg -3'
miRNA:   3'- cgUUGCG-GCCcuaCUGGAAGaGGCUC- -5'
19240 5' -55.1 NC_004684.1 + 55878 0.66 0.784529
Target:  5'- -gGugGCCGGGGcaugGACCUgC-CCGAu -3'
miRNA:   3'- cgUugCGGCCCUa---CUGGAaGaGGCUc -5'
19240 5' -55.1 NC_004684.1 + 9574 0.66 0.784529
Target:  5'- aGCAcCGCCGGGAccaGGCCguggUCGGGu -3'
miRNA:   3'- -CGUuGCGGCCCUa--CUGGaagaGGCUC- -5'
19240 5' -55.1 NC_004684.1 + 48302 0.66 0.774752
Target:  5'- -gAACGCCaccGGAUGcgacuGCCUcacCUCCGAGg -3'
miRNA:   3'- cgUUGCGGc--CCUAC-----UGGAa--GAGGCUC- -5'
19240 5' -55.1 NC_004684.1 + 13832 0.66 0.764833
Target:  5'- gGCGuuGCGCCGucGUGG--UUCUCCGAGg -3'
miRNA:   3'- -CGU--UGCGGCccUACUggAAGAGGCUC- -5'
19240 5' -55.1 NC_004684.1 + 51477 0.66 0.764833
Target:  5'- cCggUGCCGGGuaGGCC-UCUgCCGGGa -3'
miRNA:   3'- cGuuGCGGCCCuaCUGGaAGA-GGCUC- -5'
19240 5' -55.1 NC_004684.1 + 12202 0.66 0.764833
Target:  5'- cCAGCGCCGccgccagcGGUG-CgUUCUCCGGGg -3'
miRNA:   3'- cGUUGCGGCc-------CUACuGgAAGAGGCUC- -5'
19240 5' -55.1 NC_004684.1 + 2682 0.67 0.751744
Target:  5'- uCAGCGCCGGGcAccgcauccccggccUGGCCggugCCGGGg -3'
miRNA:   3'- cGUUGCGGCCC-U--------------ACUGGaagaGGCUC- -5'
19240 5' -55.1 NC_004684.1 + 63010 0.67 0.744612
Target:  5'- cGCGAUGCgCaGGAUGACCgcg-CCGGa -3'
miRNA:   3'- -CGUUGCG-GcCCUACUGGaagaGGCUc -5'
19240 5' -55.1 NC_004684.1 + 5961 0.67 0.734332
Target:  5'- gGCcGCGCCGGuGAgcGACCgg--CCGAGc -3'
miRNA:   3'- -CGuUGCGGCC-CUa-CUGGaagaGGCUC- -5'
19240 5' -55.1 NC_004684.1 + 58321 0.67 0.723954
Target:  5'- gGCGACGCCGGGucAUGGCgcgC-CCGGu -3'
miRNA:   3'- -CGUUGCGGCCC--UACUGgaaGaGGCUc -5'
19240 5' -55.1 NC_004684.1 + 6855 0.67 0.713487
Target:  5'- gGCGACGCCGuGGUgGugCUgcacuggCUCUGGGg -3'
miRNA:   3'- -CGUUGCGGCcCUA-CugGAa------GAGGCUC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.