miRNA display CGI


Results 1 - 20 of 275 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19242 5' -56.9 NC_004684.1 + 38156 0.66 0.646286
Target:  5'- cGCGCAugGuCGCCGGaCGAuaacACCgCGAg -3'
miRNA:   3'- uCGUGUugU-GUGGCC-GCU----UGGgGCUg -5'
19242 5' -56.9 NC_004684.1 + 40426 0.66 0.67845
Target:  5'- -cUugGACGCACCGGCcuuggucagcGGugCCCaGGCg -3'
miRNA:   3'- ucGugUUGUGUGGCCG----------CUugGGG-CUG- -5'
19242 5' -56.9 NC_004684.1 + 58726 0.66 0.677382
Target:  5'- aGGCACcuggcCGCACCGggcacgcaugaucGCGuuGCCCUGGCg -3'
miRNA:   3'- -UCGUGuu---GUGUGGC-------------CGCu-UGGGGCUG- -5'
19242 5' -56.9 NC_004684.1 + 15872 0.66 0.657033
Target:  5'- gAGCACGugGcCGCCaGCG-GCCCUGuGCa -3'
miRNA:   3'- -UCGUGUugU-GUGGcCGCuUGGGGC-UG- -5'
19242 5' -56.9 NC_004684.1 + 15772 0.66 0.646286
Target:  5'- cGGCACcuauCGCGgCGGCGAca-CCGGCa -3'
miRNA:   3'- -UCGUGuu--GUGUgGCCGCUuggGGCUG- -5'
19242 5' -56.9 NC_004684.1 + 44758 0.66 0.657033
Target:  5'- cGUGCAuCGugUACCGGCGAccgucgggGCCCCGcCa -3'
miRNA:   3'- uCGUGUuGU--GUGGCCGCU--------UGGGGCuG- -5'
19242 5' -56.9 NC_004684.1 + 53046 0.66 0.646286
Target:  5'- uGCGCggUGCccaGCaCGGUGGugUCCGACu -3'
miRNA:   3'- uCGUGuuGUG---UG-GCCGCUugGGGCUG- -5'
19242 5' -56.9 NC_004684.1 + 49608 0.66 0.646286
Target:  5'- aGGCgucguuGCGGCugGCCGGUGuccAGCCCagCGGCu -3'
miRNA:   3'- -UCG------UGUUGugUGGCCGC---UUGGG--GCUG- -5'
19242 5' -56.9 NC_004684.1 + 46695 0.66 0.646286
Target:  5'- cGGUGCGgugGCGCGCCcuguGCGAgcgcGCCaCCGACa -3'
miRNA:   3'- -UCGUGU---UGUGUGGc---CGCU----UGG-GGCUG- -5'
19242 5' -56.9 NC_004684.1 + 53951 0.66 0.646286
Target:  5'- aGGCACAGCugaGCACCGcacaguucggauGUGAACaCCCuGCg -3'
miRNA:   3'- -UCGUGUUG---UGUGGC------------CGCUUG-GGGcUG- -5'
19242 5' -56.9 NC_004684.1 + 26830 0.66 0.646286
Target:  5'- cGaCAcCAGCGCGCUGGUGGACCggUCGAg -3'
miRNA:   3'- uC-GU-GUUGUGUGGCCGCUUGG--GGCUg -5'
19242 5' -56.9 NC_004684.1 + 34156 0.66 0.667757
Target:  5'- cGGCACGguGCugcuCACCGGC--ACgCCCGAg -3'
miRNA:   3'- -UCGUGU--UGu---GUGGCCGcuUG-GGGCUg -5'
19242 5' -56.9 NC_004684.1 + 3825 0.66 0.667757
Target:  5'- uGCugGGCGCguuCGGCGuGCCgaCCGACg -3'
miRNA:   3'- uCGugUUGUGug-GCCGCuUGG--GGCUG- -5'
19242 5' -56.9 NC_004684.1 + 11496 0.66 0.657033
Target:  5'- gGGCACAuCGCcuGCUGG-GAcUCCCGGCa -3'
miRNA:   3'- -UCGUGUuGUG--UGGCCgCUuGGGGCUG- -5'
19242 5' -56.9 NC_004684.1 + 14493 0.66 0.666686
Target:  5'- cGGUACcACGCcggucGCCGGUGGcacggugacggugACCCUGGCc -3'
miRNA:   3'- -UCGUGuUGUG-----UGGCCGCU-------------UGGGGCUG- -5'
19242 5' -56.9 NC_004684.1 + 43131 0.66 0.646286
Target:  5'- cGCGCGACuuGCCcaGGCGGGCCagGAUg -3'
miRNA:   3'- uCGUGUUGugUGG--CCGCUUGGggCUG- -5'
19242 5' -56.9 NC_004684.1 + 64919 0.66 0.645211
Target:  5'- uGGCgGCGACccaggugGCGgCGGUGAGCgCCUGGCg -3'
miRNA:   3'- -UCG-UGUUG-------UGUgGCCGCUUG-GGGCUG- -5'
19242 5' -56.9 NC_004684.1 + 66522 0.66 0.657033
Target:  5'- cGCcuuCAGCGCGgcCCGGCGGGCa-CGGCg -3'
miRNA:   3'- uCGu--GUUGUGU--GGCCGCUUGggGCUG- -5'
19242 5' -56.9 NC_004684.1 + 1707 0.66 0.667757
Target:  5'- uGCACcuGGCagGCACCGGCcaguGCCgCGACc -3'
miRNA:   3'- uCGUG--UUG--UGUGGCCGcu--UGGgGCUG- -5'
19242 5' -56.9 NC_004684.1 + 57496 0.66 0.657033
Target:  5'- aAGCGCcGCACGCaGGUgccugcgccGGAUCCCGAg -3'
miRNA:   3'- -UCGUGuUGUGUGgCCG---------CUUGGGGCUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.