miRNA display CGI


Results 1 - 20 of 275 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19242 5' -56.9 NC_004684.1 + 56607 1.1 0.000734
Target:  5'- gAGCACAACACACCGGCGAACCCCGACa -3'
miRNA:   3'- -UCGUGUUGUGUGGCCGCUUGGGGCUG- -5'
19242 5' -56.9 NC_004684.1 + 66754 0.84 0.059043
Target:  5'- cGGUACAGCACcCCGGCGA-CCUCGGCg -3'
miRNA:   3'- -UCGUGUUGUGuGGCCGCUuGGGGCUG- -5'
19242 5' -56.9 NC_004684.1 + 28043 0.82 0.080532
Target:  5'- gAGCGCGAgauCAUGCCGGUGGucgGCCCCGGCg -3'
miRNA:   3'- -UCGUGUU---GUGUGGCCGCU---UGGGGCUG- -5'
19242 5' -56.9 NC_004684.1 + 12617 0.79 0.112433
Target:  5'- cGCGCAccuuGCggGCACCGGCGAGgaacugacCCCCGACg -3'
miRNA:   3'- uCGUGU----UG--UGUGGCCGCUU--------GGGGCUG- -5'
19242 5' -56.9 NC_004684.1 + 9229 0.79 0.125478
Target:  5'- cGGCACAGuCGCACCGGCu--CCCCGGu -3'
miRNA:   3'- -UCGUGUU-GUGUGGCCGcuuGGGGCUg -5'
19242 5' -56.9 NC_004684.1 + 34065 0.78 0.151724
Target:  5'- --aGgGGCACACCGGCG-ACCCUGGCg -3'
miRNA:   3'- ucgUgUUGUGUGGCCGCuUGGGGCUG- -5'
19242 5' -56.9 NC_004684.1 + 38812 0.77 0.160093
Target:  5'- cGGCGguGCcCGCCuGGCGGugCCCGACg -3'
miRNA:   3'- -UCGUguUGuGUGG-CCGCUugGGGCUG- -5'
19242 5' -56.9 NC_004684.1 + 9051 0.77 0.168427
Target:  5'- uGGCACGACGCcaGCCagcucacGGUGGACCCgGACa -3'
miRNA:   3'- -UCGUGUUGUG--UGG-------CCGCUUGGGgCUG- -5'
19242 5' -56.9 NC_004684.1 + 42893 0.76 0.178088
Target:  5'- cGCGCGGCcCugCGGCaccGCCCCGGCg -3'
miRNA:   3'- uCGUGUUGuGugGCCGcu-UGGGGCUG- -5'
19242 5' -56.9 NC_004684.1 + 5674 0.76 0.197858
Target:  5'- aAGCACA--ACGCCGGUGGcAUCCUGACg -3'
miRNA:   3'- -UCGUGUugUGUGGCCGCU-UGGGGCUG- -5'
19242 5' -56.9 NC_004684.1 + 8589 0.76 0.203091
Target:  5'- gAGCAUgAACGCGCCGGUG-GCCUCGAa -3'
miRNA:   3'- -UCGUG-UUGUGUGGCCGCuUGGGGCUg -5'
19242 5' -56.9 NC_004684.1 + 8426 0.76 0.203091
Target:  5'- cAGCGCGGCAgcUCGGCGGACagggCCCGGCg -3'
miRNA:   3'- -UCGUGUUGUguGGCCGCUUG----GGGCUG- -5'
19242 5' -56.9 NC_004684.1 + 18311 0.75 0.219514
Target:  5'- gAGCACAucacccuguuccGCACGCCGGUGccgcCCCCGGa -3'
miRNA:   3'- -UCGUGU------------UGUGUGGCCGCuu--GGGGCUg -5'
19242 5' -56.9 NC_004684.1 + 20838 0.75 0.219514
Target:  5'- cGGCACcaAGCGCACCGGCGucguucUUCCGACc -3'
miRNA:   3'- -UCGUG--UUGUGUGGCCGCuu----GGGGCUG- -5'
19242 5' -56.9 NC_004684.1 + 14750 0.75 0.225236
Target:  5'- gAGCGCaAGCAUGCCGGUGauggcgacGugCCCGGCa -3'
miRNA:   3'- -UCGUG-UUGUGUGGCCGC--------UugGGGCUG- -5'
19242 5' -56.9 NC_004684.1 + 52410 0.75 0.237058
Target:  5'- aGGCGCAgguucugcguuGCACGCaaGCGGACCUCGGCu -3'
miRNA:   3'- -UCGUGU-----------UGUGUGgcCGCUUGGGGCUG- -5'
19242 5' -56.9 NC_004684.1 + 45101 0.74 0.243162
Target:  5'- cGGCACcGC-CGCCGcGCGGGCCuuGGCc -3'
miRNA:   3'- -UCGUGuUGuGUGGC-CGCUUGGggCUG- -5'
19242 5' -56.9 NC_004684.1 + 41442 0.74 0.243162
Target:  5'- cGGCGguGC-CGCCGGUGucaguggggcuGACCCCGGCg -3'
miRNA:   3'- -UCGUguUGuGUGGCCGC-----------UUGGGGCUG- -5'
19242 5' -56.9 NC_004684.1 + 7451 0.74 0.255761
Target:  5'- cAGCACAACGCGCacguggGGcCGGACaCCGACg -3'
miRNA:   3'- -UCGUGUUGUGUGg-----CC-GCUUGgGGCUG- -5'
19242 5' -56.9 NC_004684.1 + 9357 0.74 0.255761
Target:  5'- cAGaCGCAGCuCAUCGGCGAaauggucgGCCUCGGCg -3'
miRNA:   3'- -UC-GUGUUGuGUGGCCGCU--------UGGGGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.