miRNA display CGI


Results 1 - 20 of 275 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19242 5' -56.9 NC_004684.1 + 414 0.67 0.624766
Target:  5'- aAGCugGGCG-ACUGGC--ACCCCGAg -3'
miRNA:   3'- -UCGugUUGUgUGGCCGcuUGGGGCUg -5'
19242 5' -56.9 NC_004684.1 + 700 0.72 0.350846
Target:  5'- gAGguCAGC-CGCCGGUGGACggCCUGGCg -3'
miRNA:   3'- -UCguGUUGuGUGGCCGCUUG--GGGCUG- -5'
19242 5' -56.9 NC_004684.1 + 1509 0.66 0.699698
Target:  5'- uGCGCGAC-CACuaCGGCGucAACCCCu-- -3'
miRNA:   3'- uCGUGUUGuGUG--GCCGC--UUGGGGcug -5'
19242 5' -56.9 NC_004684.1 + 1602 0.66 0.6891
Target:  5'- uGCACGGCAucgguCGCCGuGCGcgcGCCCacCGGCg -3'
miRNA:   3'- uCGUGUUGU-----GUGGC-CGCu--UGGG--GCUG- -5'
19242 5' -56.9 NC_004684.1 + 1622 0.72 0.334708
Target:  5'- cGGCACcu-GCACCGGCGcAACCggguaCCGGCg -3'
miRNA:   3'- -UCGUGuugUGUGGCCGC-UUGG-----GGCUG- -5'
19242 5' -56.9 NC_004684.1 + 1707 0.66 0.667757
Target:  5'- uGCACcuGGCagGCACCGGCcaguGCCgCGACc -3'
miRNA:   3'- uCGUG--UUG--UGUGGCCGcu--UGGgGCUG- -5'
19242 5' -56.9 NC_004684.1 + 1961 0.73 0.311533
Target:  5'- cGCGCcGCACGCCaGCGcAGCgCCUGGCg -3'
miRNA:   3'- uCGUGuUGUGUGGcCGC-UUG-GGGCUG- -5'
19242 5' -56.9 NC_004684.1 + 1999 0.66 0.699698
Target:  5'- uGCugGccuGgGCGCUGGaccGCCCCGACg -3'
miRNA:   3'- uCGugU---UgUGUGGCCgcuUGGGGCUG- -5'
19242 5' -56.9 NC_004684.1 + 2416 0.66 0.699698
Target:  5'- uGGCACcguucCAgACCGGCG-ACaaggCCGACa -3'
miRNA:   3'- -UCGUGuu---GUgUGGCCGCuUGg---GGCUG- -5'
19242 5' -56.9 NC_004684.1 + 3200 0.72 0.350846
Target:  5'- ---cCGGCACACCGGC-AACgCCGACg -3'
miRNA:   3'- ucguGUUGUGUGGCCGcUUGgGGCUG- -5'
19242 5' -56.9 NC_004684.1 + 3545 0.66 0.699698
Target:  5'- cGCACGugGCACCGacaGCGuGCgCCG-Cg -3'
miRNA:   3'- uCGUGUugUGUGGC---CGCuUGgGGCuG- -5'
19242 5' -56.9 NC_004684.1 + 3825 0.66 0.667757
Target:  5'- uGCugGGCGCguuCGGCGuGCCgaCCGACg -3'
miRNA:   3'- uCGugUUGUGug-GCCGCuUGG--GGCUG- -5'
19242 5' -56.9 NC_004684.1 + 3862 0.72 0.350846
Target:  5'- gAGCGC--CACGCCcGCGAGCUgCGACg -3'
miRNA:   3'- -UCGUGuuGUGUGGcCGCUUGGgGCUG- -5'
19242 5' -56.9 NC_004684.1 + 3942 0.69 0.488349
Target:  5'- aGGUgACGuucucCGCACCGGaCG-ACCCCGGCc -3'
miRNA:   3'- -UCG-UGUu----GUGUGGCC-GCuUGGGGCUG- -5'
19242 5' -56.9 NC_004684.1 + 4161 0.68 0.529191
Target:  5'- gGGC-CGACGC-CCGGCaacGAGCCgCCGGu -3'
miRNA:   3'- -UCGuGUUGUGuGGCCG---CUUGG-GGCUg -5'
19242 5' -56.9 NC_004684.1 + 4794 0.67 0.592553
Target:  5'- uGCGCGACGCcaugACCGGCGcGCagaUCGAg -3'
miRNA:   3'- uCGUGUUGUG----UGGCCGCuUGg--GGCUg -5'
19242 5' -56.9 NC_004684.1 + 5058 0.67 0.600052
Target:  5'- cGGCGCuccCACGauccugauccagacCCGGUGGcACCCCGAa -3'
miRNA:   3'- -UCGUGuu-GUGU--------------GGCCGCU-UGGGGCUg -5'
19242 5' -56.9 NC_004684.1 + 5150 0.66 0.667757
Target:  5'- gGGCAgGACcaGCCGcGCu-ACCCCGAUg -3'
miRNA:   3'- -UCGUgUUGugUGGC-CGcuUGGGGCUG- -5'
19242 5' -56.9 NC_004684.1 + 5305 0.66 0.699698
Target:  5'- cAGCuacgACGACGCGCUGGCG-ACCgUGcaGCa -3'
miRNA:   3'- -UCG----UGUUGUGUGGCCGCuUGGgGC--UG- -5'
19242 5' -56.9 NC_004684.1 + 5632 0.66 0.646286
Target:  5'- gAGCugGACGC-CUGGUucGCCCgUGGCg -3'
miRNA:   3'- -UCGugUUGUGuGGCCGcuUGGG-GCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.