miRNA display CGI


Results 1 - 20 of 275 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19242 5' -56.9 NC_004684.1 + 20595 0.71 0.367529
Target:  5'- aGGCACGcuCACGCCGaGCGucuACCUgGGCa -3'
miRNA:   3'- -UCGUGUu-GUGUGGC-CGCu--UGGGgCUG- -5'
19242 5' -56.9 NC_004684.1 + 24918 0.73 0.289597
Target:  5'- cGCGauCAGCGCGCUgGGCGGcgACCCCGAg -3'
miRNA:   3'- uCGU--GUUGUGUGG-CCGCU--UGGGGCUg -5'
19242 5' -56.9 NC_004684.1 + 15306 0.73 0.311533
Target:  5'- uGGCGCGACGCGgUGGC-AACCCgCGAa -3'
miRNA:   3'- -UCGUGUUGUGUgGCCGcUUGGG-GCUg -5'
19242 5' -56.9 NC_004684.1 + 20074 0.73 0.311533
Target:  5'- cGCGCu-CAaGCUGGCGuucAACCCCGACg -3'
miRNA:   3'- uCGUGuuGUgUGGCCGC---UUGGGGCUG- -5'
19242 5' -56.9 NC_004684.1 + 18397 0.72 0.316829
Target:  5'- gGGCACGACcuacuacuucggcgGC-CCGGCGGGCgCaCCGGCg -3'
miRNA:   3'- -UCGUGUUG--------------UGuGGCCGCUUG-G-GGCUG- -5'
19242 5' -56.9 NC_004684.1 + 45815 0.72 0.326845
Target:  5'- cGUGCGGCAUugacCCGGUGAcgGCCUCGGCg -3'
miRNA:   3'- uCGUGUUGUGu---GGCCGCU--UGGGGCUG- -5'
19242 5' -56.9 NC_004684.1 + 1622 0.72 0.334708
Target:  5'- cGGCACcu-GCACCGGCGcAACCggguaCCGGCg -3'
miRNA:   3'- -UCGUGuugUGUGGCCGC-UUGG-----GGCUG- -5'
19242 5' -56.9 NC_004684.1 + 66872 0.72 0.342708
Target:  5'- cAGCACGucaGCGCCGGUGGcgACCUuCGGCg -3'
miRNA:   3'- -UCGUGUug-UGUGGCCGCU--UGGG-GCUG- -5'
19242 5' -56.9 NC_004684.1 + 700 0.72 0.350846
Target:  5'- gAGguCAGC-CGCCGGUGGACggCCUGGCg -3'
miRNA:   3'- -UCguGUUGuGUGGCCGCUUG--GGGCUG- -5'
19242 5' -56.9 NC_004684.1 + 53666 0.74 0.271581
Target:  5'- aAGCGCAggcGCACACgGGUGGGCCggaacaccugguuggCCGACc -3'
miRNA:   3'- -UCGUGU---UGUGUGgCCGCUUGG---------------GGCUG- -5'
19242 5' -56.9 NC_004684.1 + 41442 0.74 0.243162
Target:  5'- cGGCGguGC-CGCCGGUGucaguggggcuGACCCCGGCg -3'
miRNA:   3'- -UCGUguUGuGUGGCCGC-----------UUGGGGCUG- -5'
19242 5' -56.9 NC_004684.1 + 18311 0.75 0.219514
Target:  5'- gAGCACAucacccuguuccGCACGCCGGUGccgcCCCCGGa -3'
miRNA:   3'- -UCGUGU------------UGUGUGGCCGCuu--GGGGCUg -5'
19242 5' -56.9 NC_004684.1 + 66754 0.84 0.059043
Target:  5'- cGGUACAGCACcCCGGCGA-CCUCGGCg -3'
miRNA:   3'- -UCGUGUUGUGuGGCCGCUuGGGGCUG- -5'
19242 5' -56.9 NC_004684.1 + 28043 0.82 0.080532
Target:  5'- gAGCGCGAgauCAUGCCGGUGGucgGCCCCGGCg -3'
miRNA:   3'- -UCGUGUU---GUGUGGCCGCU---UGGGGCUG- -5'
19242 5' -56.9 NC_004684.1 + 12617 0.79 0.112433
Target:  5'- cGCGCAccuuGCggGCACCGGCGAGgaacugacCCCCGACg -3'
miRNA:   3'- uCGUGU----UG--UGUGGCCGCUU--------GGGGCUG- -5'
19242 5' -56.9 NC_004684.1 + 34065 0.78 0.151724
Target:  5'- --aGgGGCACACCGGCG-ACCCUGGCg -3'
miRNA:   3'- ucgUgUUGUGUGGCCGCuUGGGGCUG- -5'
19242 5' -56.9 NC_004684.1 + 38812 0.77 0.160093
Target:  5'- cGGCGguGCcCGCCuGGCGGugCCCGACg -3'
miRNA:   3'- -UCGUguUGuGUGG-CCGCUugGGGCUG- -5'
19242 5' -56.9 NC_004684.1 + 9051 0.77 0.168427
Target:  5'- uGGCACGACGCcaGCCagcucacGGUGGACCCgGACa -3'
miRNA:   3'- -UCGUGUUGUG--UGG-------CCGCUUGGGgCUG- -5'
19242 5' -56.9 NC_004684.1 + 5674 0.76 0.197858
Target:  5'- aAGCACA--ACGCCGGUGGcAUCCUGACg -3'
miRNA:   3'- -UCGUGUugUGUGGCCGCU-UGGGGCUG- -5'
19242 5' -56.9 NC_004684.1 + 8589 0.76 0.203091
Target:  5'- gAGCAUgAACGCGCCGGUG-GCCUCGAa -3'
miRNA:   3'- -UCGUG-UUGUGUGGCCGCuUGGGGCUg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.