miRNA display CGI


Results 1 - 20 of 27 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19244 3' -53.5 NC_004684.1 + 30021 0.66 0.866195
Target:  5'- aGCGg--CUCCUGGCuGAGCgugaacgcgcgcucGCCGGUCg -3'
miRNA:   3'- -CGUacaGAGGGCUG-UUUGa-------------CGGCCAG- -5'
19244 3' -53.5 NC_004684.1 + 23552 0.66 0.854699
Target:  5'- gGCAUcgGUCgcggCCUgGACAGcCUGCCGGg- -3'
miRNA:   3'- -CGUA--CAGa---GGG-CUGUUuGACGGCCag -5'
19244 3' -53.5 NC_004684.1 + 6080 0.66 0.846207
Target:  5'- gGCGgcgg-CCCGGCGGcgguGCUGCCGGa- -3'
miRNA:   3'- -CGUacagaGGGCUGUU----UGACGGCCag -5'
19244 3' -53.5 NC_004684.1 + 67316 0.66 0.837491
Target:  5'- gGCAuUGUCUCCuCGACAAAUaggGCCuucgcccuauccGGUUu -3'
miRNA:   3'- -CGU-ACAGAGG-GCUGUUUGa--CGG------------CCAG- -5'
19244 3' -53.5 NC_004684.1 + 25699 0.66 0.834834
Target:  5'- cGCGUGgcgCagCUGGCAugcccaacaucaugAGcCUGCCGGUCa -3'
miRNA:   3'- -CGUACa--GagGGCUGU--------------UU-GACGGCCAG- -5'
19244 3' -53.5 NC_004684.1 + 32776 0.66 0.828559
Target:  5'- aGCAUGa---CCGGguGGCUGCCGGa- -3'
miRNA:   3'- -CGUACagagGGCUguUUGACGGCCag -5'
19244 3' -53.5 NC_004684.1 + 62052 0.67 0.819422
Target:  5'- gGCAUGUCagcccaCCGcCAcccacuGCUGCaCGGUCg -3'
miRNA:   3'- -CGUACAGag----GGCuGUu-----UGACG-GCCAG- -5'
19244 3' -53.5 NC_004684.1 + 12661 0.67 0.810087
Target:  5'- gGCGguauUGUCUCCUGGCcuGCgaaaaCGGUCg -3'
miRNA:   3'- -CGU----ACAGAGGGCUGuuUGacg--GCCAG- -5'
19244 3' -53.5 NC_004684.1 + 13715 0.67 0.810087
Target:  5'- ----aUCaUCCCGACccaggcGCUGUCGGUCg -3'
miRNA:   3'- cguacAG-AGGGCUGuu----UGACGGCCAG- -5'
19244 3' -53.5 NC_004684.1 + 51683 0.67 0.810087
Target:  5'- -gGUGUCUCCgGgaGCAcgaUGCCGGUg -3'
miRNA:   3'- cgUACAGAGGgC--UGUuugACGGCCAg -5'
19244 3' -53.5 NC_004684.1 + 31462 0.67 0.790871
Target:  5'- aCGUGUCauUUCCGcGCGcGCUGCUGGUg -3'
miRNA:   3'- cGUACAG--AGGGC-UGUuUGACGGCCAg -5'
19244 3' -53.5 NC_004684.1 + 25084 0.67 0.790871
Target:  5'- aCGUGgccgacCUCCCGGCAGGCaUGUCGcUCa -3'
miRNA:   3'- cGUACa-----GAGGGCUGUUUG-ACGGCcAG- -5'
19244 3' -53.5 NC_004684.1 + 59274 0.68 0.770994
Target:  5'- cGCG-GUCgUCCuCGuCAAuGCUGCCGGUg -3'
miRNA:   3'- -CGUaCAG-AGG-GCuGUU-UGACGGCCAg -5'
19244 3' -53.5 NC_004684.1 + 39355 0.68 0.770994
Target:  5'- gGCAUGaUCUCgCG-Cu--CUGCCGGUg -3'
miRNA:   3'- -CGUAC-AGAGgGCuGuuuGACGGCCAg -5'
19244 3' -53.5 NC_004684.1 + 63336 0.68 0.760836
Target:  5'- cCcgGUCaCCCGGCGAug-GCCGGUa -3'
miRNA:   3'- cGuaCAGaGGGCUGUUugaCGGCCAg -5'
19244 3' -53.5 NC_004684.1 + 62582 0.68 0.740135
Target:  5'- aGCuUGUC-CUCGAUcuGCgcGCCGGUCa -3'
miRNA:   3'- -CGuACAGaGGGCUGuuUGa-CGGCCAG- -5'
19244 3' -53.5 NC_004684.1 + 13011 0.69 0.697522
Target:  5'- uUAUGUCcCCCGACGcgcccgguuACgucgccggGCCGGUCg -3'
miRNA:   3'- cGUACAGaGGGCUGUu--------UGa-------CGGCCAG- -5'
19244 3' -53.5 NC_004684.1 + 54483 0.69 0.67579
Target:  5'- uGCAUGUCcCuuGACAAc--GCCGGUa -3'
miRNA:   3'- -CGUACAGaGggCUGUUugaCGGCCAg -5'
19244 3' -53.5 NC_004684.1 + 67285 0.7 0.658282
Target:  5'- uGCAggUGUUgcgCCgGGCGAGCUGCCaaacggcgaugacuuGGUCg -3'
miRNA:   3'- -CGU--ACAGa--GGgCUGUUUGACGG---------------CCAG- -5'
19244 3' -53.5 NC_004684.1 + 34911 0.7 0.653893
Target:  5'- gGCAagGUCUaCCCGACcgaAAACUGcCCGG-Ca -3'
miRNA:   3'- -CGUa-CAGA-GGGCUG---UUUGAC-GGCCaG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.