miRNA display CGI


Results 1 - 20 of 134 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19244 5' -59.3 NC_004684.1 + 65760 0.66 0.5598
Target:  5'- -gGGCGuuGGcCGCCGCGCGCcGGUGg-- -3'
miRNA:   3'- agCUGU--UC-GCGGCGUGCGuCCACgga -5'
19244 5' -59.3 NC_004684.1 + 66979 0.66 0.517491
Target:  5'- gUCGACccAGUGCaccaggauuucccCGUACGCGGG-GCCg -3'
miRNA:   3'- -AGCUGu-UCGCG-------------GCGUGCGUCCaCGGa -5'
19244 5' -59.3 NC_004684.1 + 24779 0.66 0.528727
Target:  5'- gCGGCGggggaGGUGCCGgGuCGaAGGUGCCg -3'
miRNA:   3'- aGCUGU-----UCGCGGCgU-GCgUCCACGGa -5'
19244 5' -59.3 NC_004684.1 + 51693 0.66 0.549379
Target:  5'- uUUGACcAGCGCCGgAC-CuuuaccGGUGCCg -3'
miRNA:   3'- -AGCUGuUCGCGGCgUGcGu-----CCACGGa -5'
19244 5' -59.3 NC_004684.1 + 46766 0.66 0.528727
Target:  5'- cUCGACGcGCuGgCGCuCGCcGGUGCCc -3'
miRNA:   3'- -AGCUGUuCG-CgGCGuGCGuCCACGGa -5'
19244 5' -59.3 NC_004684.1 + 61319 0.66 0.549379
Target:  5'- cCGcCGGGcCGCCGCccucggcgGCGUAGGUGgCg -3'
miRNA:   3'- aGCuGUUC-GCGGCG--------UGCGUCCACgGa -5'
19244 5' -59.3 NC_004684.1 + 40727 0.66 0.518508
Target:  5'- aCGACcAGCGCgGCgggggcggugGCGguGGUGUUg -3'
miRNA:   3'- aGCUGuUCGCGgCG----------UGCguCCACGGa -5'
19244 5' -59.3 NC_004684.1 + 622 0.66 0.508369
Target:  5'- gCGGCGAguaccGCGCCGagguCGCcgGGGUGCUg -3'
miRNA:   3'- aGCUGUU-----CGCGGCgu--GCG--UCCACGGa -5'
19244 5' -59.3 NC_004684.1 + 57591 0.66 0.518508
Target:  5'- gCGuCGGGUGCCaCcgGCGCAGG-GCCUc -3'
miRNA:   3'- aGCuGUUCGCGGcG--UGCGUCCaCGGA- -5'
19244 5' -59.3 NC_004684.1 + 60521 0.66 0.517491
Target:  5'- aUCGaccGCAGGCugaucucGCCGCGC-CcGGUGCCg -3'
miRNA:   3'- -AGC---UGUUCG-------CGGCGUGcGuCCACGGa -5'
19244 5' -59.3 NC_004684.1 + 29525 0.66 0.508369
Target:  5'- -aGGCcuGCGCUGguCGguGGUuGCCg -3'
miRNA:   3'- agCUGuuCGCGGCguGCguCCA-CGGa -5'
19244 5' -59.3 NC_004684.1 + 6495 0.66 0.54834
Target:  5'- uUCGACAucgGGUGCUccuucucgggGCugGCGGGUcugucccGCCg -3'
miRNA:   3'- -AGCUGU---UCGCGG----------CGugCGUCCA-------CGGa -5'
19244 5' -59.3 NC_004684.1 + 52598 0.66 0.508369
Target:  5'- -gGACAGcGCGCCGC-CGUAGuuGUGCg- -3'
miRNA:   3'- agCUGUU-CGCGGCGuGCGUC--CACGga -5'
19244 5' -59.3 NC_004684.1 + 23196 0.66 0.518508
Target:  5'- gUCGACAAGUaCCGCG---AGGUGCUg -3'
miRNA:   3'- -AGCUGUUCGcGGCGUgcgUCCACGGa -5'
19244 5' -59.3 NC_004684.1 + 3865 0.66 0.549379
Target:  5'- -aGGCA--CGCCGCuGCGCA-GUGCCa -3'
miRNA:   3'- agCUGUucGCGGCG-UGCGUcCACGGa -5'
19244 5' -59.3 NC_004684.1 + 31455 0.66 0.528727
Target:  5'- uUCGAgGAcGUGUcauuuccgCGCGCGCugcuGGUGCCg -3'
miRNA:   3'- -AGCUgUU-CGCG--------GCGUGCGu---CCACGGa -5'
19244 5' -59.3 NC_004684.1 + 53733 0.66 0.528727
Target:  5'- -gGACcguGCGCCacgagacacCACGCAGGUGCg- -3'
miRNA:   3'- agCUGuu-CGCGGc--------GUGCGUCCACGga -5'
19244 5' -59.3 NC_004684.1 + 59085 0.66 0.5598
Target:  5'- cCGGCGucAGCGCCaaccacuccgGCAC-CGGGUuGCCg -3'
miRNA:   3'- aGCUGU--UCGCGG----------CGUGcGUCCA-CGGa -5'
19244 5' -59.3 NC_004684.1 + 49054 0.66 0.522587
Target:  5'- cUCGGCAGGCucggccaggugcucGUCGCccACgucgccgccaaccgGCAGGUGCCa -3'
miRNA:   3'- -AGCUGUUCG--------------CGGCG--UG--------------CGUCCACGGa -5'
19244 5' -59.3 NC_004684.1 + 1954 0.66 0.539019
Target:  5'- gUGGCcgcGCGCCGCACGcCAGcGcagcGCCUg -3'
miRNA:   3'- aGCUGuu-CGCGGCGUGC-GUC-Ca---CGGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.