miRNA display CGI


Results 1 - 20 of 134 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19244 5' -59.3 NC_004684.1 + 57490 1.08 0.00056
Target:  5'- gUCGACAAGCGCCGCACGCAGGUGCCUg -3'
miRNA:   3'- -AGCUGUUCGCGGCGUGCGUCCACGGA- -5'
19244 5' -59.3 NC_004684.1 + 45165 0.8 0.06969
Target:  5'- aUCGcGCGGGUGCCGuCGCGCAGGgagGCCa -3'
miRNA:   3'- -AGC-UGUUCGCGGC-GUGCGUCCa--CGGa -5'
19244 5' -59.3 NC_004684.1 + 65883 0.79 0.082342
Target:  5'- cCGuuGAGCGCgGCGCGCAGGUugGCCa -3'
miRNA:   3'- aGCugUUCGCGgCGUGCGUCCA--CGGa -5'
19244 5' -59.3 NC_004684.1 + 43454 0.78 0.089463
Target:  5'- gCGGCGGGCGCgGCA-GCAGGUGCg- -3'
miRNA:   3'- aGCUGUUCGCGgCGUgCGUCCACGga -5'
19244 5' -59.3 NC_004684.1 + 4450 0.78 0.094532
Target:  5'- gUCGGCGcGCGCCGCGCGCuGGUcgGCUUc -3'
miRNA:   3'- -AGCUGUuCGCGGCGUGCGuCCA--CGGA- -5'
19244 5' -59.3 NC_004684.1 + 41765 0.76 0.124199
Target:  5'- aCGGCAcaccguugggcAGCGUCGCGCGCAuGUGCCc -3'
miRNA:   3'- aGCUGU-----------UCGCGGCGUGCGUcCACGGa -5'
19244 5' -59.3 NC_004684.1 + 51631 0.76 0.134666
Target:  5'- gCGAUAGGUGCCGCuGCGCAGcUGCUg -3'
miRNA:   3'- aGCUGUUCGCGGCG-UGCGUCcACGGa -5'
19244 5' -59.3 NC_004684.1 + 22877 0.75 0.16188
Target:  5'- cUCGACcauucggGAGCuGCUGCGCGUcGGUGCCa -3'
miRNA:   3'- -AGCUG-------UUCG-CGGCGUGCGuCCACGGa -5'
19244 5' -59.3 NC_004684.1 + 53190 0.74 0.165338
Target:  5'- cCGACc-GCGCCGCugGCcaggaaugcguccaGGGUGCCc -3'
miRNA:   3'- aGCUGuuCGCGGCGugCG--------------UCCACGGa -5'
19244 5' -59.3 NC_004684.1 + 60744 0.74 0.166651
Target:  5'- gUCGACAccGCGCUGCACGuCAGGgagcacgGCCc -3'
miRNA:   3'- -AGCUGUu-CGCGGCGUGC-GUCCa------CGGa -5'
19244 5' -59.3 NC_004684.1 + 32918 0.74 0.171099
Target:  5'- cUCGGC-GGUGCCGgAC-CGGGUGCCUc -3'
miRNA:   3'- -AGCUGuUCGCGGCgUGcGUCCACGGA- -5'
19244 5' -59.3 NC_004684.1 + 54363 0.74 0.171099
Target:  5'- gUUGGCAAGUGCCGgGgGCGGGgucgagGCCa -3'
miRNA:   3'- -AGCUGUUCGCGGCgUgCGUCCa-----CGGa -5'
19244 5' -59.3 NC_004684.1 + 50197 0.74 0.175651
Target:  5'- aCGACGuugccgucGGCGUCGUGC-CAGGUGCCg -3'
miRNA:   3'- aGCUGU--------UCGCGGCGUGcGUCCACGGa -5'
19244 5' -59.3 NC_004684.1 + 10316 0.74 0.185081
Target:  5'- cCGAUGugcGCGCCGCaACGCAGGccGCCa -3'
miRNA:   3'- aGCUGUu--CGCGGCG-UGCGUCCa-CGGa -5'
19244 5' -59.3 NC_004684.1 + 64836 0.74 0.189962
Target:  5'- cUCGGCGAaggccuccgcGCGCUcCACGCAGGUGCg- -3'
miRNA:   3'- -AGCUGUU----------CGCGGcGUGCGUCCACGga -5'
19244 5' -59.3 NC_004684.1 + 4223 0.73 0.193948
Target:  5'- aCGACugcaugcgccuGCGCgGCGCGCAGGaGCCg -3'
miRNA:   3'- aGCUGuu---------CGCGgCGUGCGUCCaCGGa -5'
19244 5' -59.3 NC_004684.1 + 50769 0.73 0.194955
Target:  5'- aUCGACAggaugAGCGCggugaGCAUGCAGGagGCCa -3'
miRNA:   3'- -AGCUGU-----UCGCGg----CGUGCGUCCa-CGGa -5'
19244 5' -59.3 NC_004684.1 + 43490 0.73 0.200063
Target:  5'- gCGGCGGGCGCaGCGgcaGCAGGUGCa- -3'
miRNA:   3'- aGCUGUUCGCGgCGUg--CGUCCACGga -5'
19244 5' -59.3 NC_004684.1 + 22185 0.73 0.210629
Target:  5'- aCGGCGgcGGCGaCCGCcuucggacugGCGCAGGUGgCCUc -3'
miRNA:   3'- aGCUGU--UCGC-GGCG----------UGCGUCCAC-GGA- -5'
19244 5' -59.3 NC_004684.1 + 20735 0.73 0.221671
Target:  5'- cCGAgGAGCGCCuggagGCAcCGCAggcGGUGCCg -3'
miRNA:   3'- aGCUgUUCGCGG-----CGU-GCGU---CCACGGa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.