miRNA display CGI


Results 1 - 20 of 134 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19244 5' -59.3 NC_004684.1 + 622 0.66 0.508369
Target:  5'- gCGGCGAguaccGCGCCGagguCGCcgGGGUGCUg -3'
miRNA:   3'- aGCUGUU-----CGCGGCgu--GCG--UCCACGGa -5'
19244 5' -59.3 NC_004684.1 + 1539 0.69 0.385824
Target:  5'- gCGACccuGCGCuCGCAUGC-GGUGCa- -3'
miRNA:   3'- aGCUGuu-CGCG-GCGUGCGuCCACGga -5'
19244 5' -59.3 NC_004684.1 + 1954 0.66 0.539019
Target:  5'- gUGGCcgcGCGCCGCACGcCAGcGcagcGCCUg -3'
miRNA:   3'- aGCUGuu-CGCGGCGUGC-GUC-Ca---CGGA- -5'
19244 5' -59.3 NC_004684.1 + 2271 0.67 0.495315
Target:  5'- gCGGCGGGCauuGCCGCcagccugggccacgACGC-GGUGCUg -3'
miRNA:   3'- aGCUGUUCG---CGGCG--------------UGCGuCCACGGa -5'
19244 5' -59.3 NC_004684.1 + 2713 0.69 0.385824
Target:  5'- cUCGACu-GgGaCGUACGCaAGGUGCCg -3'
miRNA:   3'- -AGCUGuuCgCgGCGUGCG-UCCACGGa -5'
19244 5' -59.3 NC_004684.1 + 2864 0.66 0.518508
Target:  5'- cCGcCGAGcCGCUGgGCGUcaucGGUGCCUg -3'
miRNA:   3'- aGCuGUUC-GCGGCgUGCGu---CCACGGA- -5'
19244 5' -59.3 NC_004684.1 + 2960 0.69 0.344152
Target:  5'- aUCGGC--GCGCUGCuguUGCGGGUGgCCa -3'
miRNA:   3'- -AGCUGuuCGCGGCGu--GCGUCCAC-GGa -5'
19244 5' -59.3 NC_004684.1 + 3865 0.66 0.549379
Target:  5'- -aGGCA--CGCCGCuGCGCA-GUGCCa -3'
miRNA:   3'- agCUGUucGCGGCG-UGCGUcCACGGa -5'
19244 5' -59.3 NC_004684.1 + 4223 0.73 0.193948
Target:  5'- aCGACugcaugcgccuGCGCgGCGCGCAGGaGCCg -3'
miRNA:   3'- aGCUGuu---------CGCGgCGUGCGUCCaCGGa -5'
19244 5' -59.3 NC_004684.1 + 4450 0.78 0.094532
Target:  5'- gUCGGCGcGCGCCGCGCGCuGGUcgGCUUc -3'
miRNA:   3'- -AGCUGUuCGCGGCGUGCGuCCA--CGGA- -5'
19244 5' -59.3 NC_004684.1 + 5600 0.7 0.320747
Target:  5'- cCGACGGG-GCCgagcugGCGCGCAuGGUGCUg -3'
miRNA:   3'- aGCUGUUCgCGG------CGUGCGU-CCACGGa -5'
19244 5' -59.3 NC_004684.1 + 6495 0.66 0.54834
Target:  5'- uUCGACAucgGGUGCUccuucucgggGCugGCGGGUcugucccGCCg -3'
miRNA:   3'- -AGCUGU---UCGCGG----------CGugCGUCCA-------CGGa -5'
19244 5' -59.3 NC_004684.1 + 7435 0.71 0.270175
Target:  5'- gCGGCAcgAGCGCCGCcagcacaacgcgcACGUGGG-GCCg -3'
miRNA:   3'- aGCUGU--UCGCGGCG-------------UGCGUCCaCGGa -5'
19244 5' -59.3 NC_004684.1 + 7844 0.73 0.221671
Target:  5'- gCGACAacGGCGCgCGCugGC-GGUGCa- -3'
miRNA:   3'- aGCUGU--UCGCG-GCGugCGuCCACGga -5'
19244 5' -59.3 NC_004684.1 + 9034 0.7 0.313215
Target:  5'- gCGGCAaccGGCGCgGCAacgccaGCAGG-GCCa -3'
miRNA:   3'- aGCUGU---UCGCGgCGUg-----CGUCCaCGGa -5'
19244 5' -59.3 NC_004684.1 + 9153 0.66 0.549379
Target:  5'- gCGGCAGGUGCgGCAacugaccuUGCcGGUGCg- -3'
miRNA:   3'- aGCUGUUCGCGgCGU--------GCGuCCACGga -5'
19244 5' -59.3 NC_004684.1 + 10196 0.68 0.4034
Target:  5'- cCGcCcAGCGCCaGCgaGCGCuggAGGUGCCUg -3'
miRNA:   3'- aGCuGuUCGCGG-CG--UGCG---UCCACGGA- -5'
19244 5' -59.3 NC_004684.1 + 10316 0.74 0.185081
Target:  5'- cCGAUGugcGCGCCGCaACGCAGGccGCCa -3'
miRNA:   3'- aGCUGUu--CGCGGCG-UGCGUCCa-CGGa -5'
19244 5' -59.3 NC_004684.1 + 12161 0.69 0.385824
Target:  5'- cCG-C-AGCGCCuugGCGCGC-GGUGCCa -3'
miRNA:   3'- aGCuGuUCGCGG---CGUGCGuCCACGGa -5'
19244 5' -59.3 NC_004684.1 + 12196 0.68 0.430693
Target:  5'- -aGGCAuccAGCGCCGC-CGCcagcGGUGCg- -3'
miRNA:   3'- agCUGU---UCGCGGCGuGCGu---CCACGga -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.