miRNA display CGI


Results 1 - 20 of 134 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19244 5' -59.3 NC_004684.1 + 59394 0.7 0.305817
Target:  5'- gCGGCAcAGuCGCUGCACuuGCAGGUGUUg -3'
miRNA:   3'- aGCUGU-UC-GCGGCGUG--CGUCCACGGa -5'
19244 5' -59.3 NC_004684.1 + 27738 0.72 0.257778
Target:  5'- uUUGaACucGCGCCGUcgaugACGCAGGUGUCg -3'
miRNA:   3'- -AGC-UGuuCGCGGCG-----UGCGUCCACGGa -5'
19244 5' -59.3 NC_004684.1 + 27844 0.71 0.264244
Target:  5'- -gGGCAccgAGCGCgcugUGCACGCAGGagUGCCg -3'
miRNA:   3'- agCUGU---UCGCG----GCGUGCGUCC--ACGGa -5'
19244 5' -59.3 NC_004684.1 + 33091 0.71 0.284431
Target:  5'- cCGGCGuGGCGCUGCcgACGCAGGcGCUc -3'
miRNA:   3'- aGCUGU-UCGCGGCG--UGCGUCCaCGGa -5'
19244 5' -59.3 NC_004684.1 + 16481 0.71 0.294261
Target:  5'- -gGGCAGGCGguguuguuuacagcaCCGCGCucCAGGUGCCg -3'
miRNA:   3'- agCUGUUCGC---------------GGCGUGc-GUCCACGGa -5'
19244 5' -59.3 NC_004684.1 + 53033 0.7 0.298554
Target:  5'- gUCGGCGuacaccugcgcGGUGCCcaGCACGguGGUGUCc -3'
miRNA:   3'- -AGCUGU-----------UCGCGG--CGUGCguCCACGGa -5'
19244 5' -59.3 NC_004684.1 + 61658 0.7 0.298554
Target:  5'- gUCGGCGAaguagcagguguGCGCCuGCACGCcauuggcgucGGUGCCg -3'
miRNA:   3'- -AGCUGUU------------CGCGG-CGUGCGu---------CCACGGa -5'
19244 5' -59.3 NC_004684.1 + 27001 0.7 0.301443
Target:  5'- gCGGCGGGCGCgGCgaucaacagccaggcAC-CGGGUGCCg -3'
miRNA:   3'- aGCUGUUCGCGgCG---------------UGcGUCCACGGa -5'
19244 5' -59.3 NC_004684.1 + 20627 0.7 0.303624
Target:  5'- cCGGCGAGCGCCaGCGCGUcgagcugaccccagAGGU-CCg -3'
miRNA:   3'- aGCUGUUCGCGG-CGUGCG--------------UCCAcGGa -5'
19244 5' -59.3 NC_004684.1 + 20735 0.73 0.221671
Target:  5'- cCGAgGAGCGCCuggagGCAcCGCAggcGGUGCCg -3'
miRNA:   3'- aGCUgUUCGCGG-----CGU-GCGU---CCACGGa -5'
19244 5' -59.3 NC_004684.1 + 22185 0.73 0.210629
Target:  5'- aCGGCGgcGGCGaCCGCcuucggacugGCGCAGGUGgCCUc -3'
miRNA:   3'- aGCUGU--UCGC-GGCG----------UGCGUCCAC-GGA- -5'
19244 5' -59.3 NC_004684.1 + 43490 0.73 0.200063
Target:  5'- gCGGCGGGCGCaGCGgcaGCAGGUGCa- -3'
miRNA:   3'- aGCUGUUCGCGgCGUg--CGUCCACGga -5'
19244 5' -59.3 NC_004684.1 + 65883 0.79 0.082342
Target:  5'- cCGuuGAGCGCgGCGCGCAGGUugGCCa -3'
miRNA:   3'- aGCugUUCGCGgCGUGCGUCCA--CGGa -5'
19244 5' -59.3 NC_004684.1 + 43454 0.78 0.089463
Target:  5'- gCGGCGGGCGCgGCA-GCAGGUGCg- -3'
miRNA:   3'- aGCUGUUCGCGgCGUgCGUCCACGga -5'
19244 5' -59.3 NC_004684.1 + 22877 0.75 0.16188
Target:  5'- cUCGACcauucggGAGCuGCUGCGCGUcGGUGCCa -3'
miRNA:   3'- -AGCUG-------UUCG-CGGCGUGCGuCCACGGa -5'
19244 5' -59.3 NC_004684.1 + 53190 0.74 0.165338
Target:  5'- cCGACc-GCGCCGCugGCcaggaaugcguccaGGGUGCCc -3'
miRNA:   3'- aGCUGuuCGCGGCGugCG--------------UCCACGGa -5'
19244 5' -59.3 NC_004684.1 + 54363 0.74 0.171099
Target:  5'- gUUGGCAAGUGCCGgGgGCGGGgucgagGCCa -3'
miRNA:   3'- -AGCUGUUCGCGGCgUgCGUCCa-----CGGa -5'
19244 5' -59.3 NC_004684.1 + 50197 0.74 0.175651
Target:  5'- aCGACGuugccgucGGCGUCGUGC-CAGGUGCCg -3'
miRNA:   3'- aGCUGU--------UCGCGGCGUGcGUCCACGGa -5'
19244 5' -59.3 NC_004684.1 + 10316 0.74 0.185081
Target:  5'- cCGAUGugcGCGCCGCaACGCAGGccGCCa -3'
miRNA:   3'- aGCUGUu--CGCGGCG-UGCGUCCa-CGGa -5'
19244 5' -59.3 NC_004684.1 + 4223 0.73 0.193948
Target:  5'- aCGACugcaugcgccuGCGCgGCGCGCAGGaGCCg -3'
miRNA:   3'- aGCUGuu---------CGCGgCGUGCGUCCaCGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.