miRNA display CGI


Results 1 - 20 of 143 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19245 5' -60.6 NC_004684.1 + 49192 0.66 0.464258
Target:  5'- -gGCGGCggCGGCCugCuCGGUcGGCCagUCGg -3'
miRNA:   3'- caUGCCG--GUCGGugG-GCCA-CUGG--AGC- -5'
19245 5' -60.6 NC_004684.1 + 5948 0.66 0.493237
Target:  5'- -gGCGGUCcaaccuGGCCGCgCCGGUGAgCgacCGg -3'
miRNA:   3'- caUGCCGG------UCGGUG-GGCCACUgGa--GC- -5'
19245 5' -60.6 NC_004684.1 + 25195 0.66 0.493237
Target:  5'- --uUGGCCAGgcgcuggCACCgGGUGGCUUCa -3'
miRNA:   3'- cauGCCGGUCg------GUGGgCCACUGGAGc -5'
19245 5' -60.6 NC_004684.1 + 51652 0.66 0.493237
Target:  5'- -cGCGGCCAGUCGCUgGGcaa-CUCGc -3'
miRNA:   3'- caUGCCGGUCGGUGGgCCacugGAGC- -5'
19245 5' -60.6 NC_004684.1 + 40360 0.66 0.51301
Target:  5'- -gGCGGCCuuGGCC-UUgGG-GGCCUCGg -3'
miRNA:   3'- caUGCCGG--UCGGuGGgCCaCUGGAGC- -5'
19245 5' -60.6 NC_004684.1 + 50663 0.66 0.464258
Target:  5'- gGUGCGGaCCAGgcgugCGCCCGGUG-CCgugCa -3'
miRNA:   3'- -CAUGCC-GGUCg----GUGGGCCACuGGa--Gc -5'
19245 5' -60.6 NC_004684.1 + 7580 0.66 0.501105
Target:  5'- gGUGCGGCUggugcgcGGCaACCCGGUGgucguguACUUCa -3'
miRNA:   3'- -CAUGCCGG-------UCGgUGGGCCAC-------UGGAGc -5'
19245 5' -60.6 NC_004684.1 + 64952 0.66 0.473821
Target:  5'- -gGCGGgCGGUgGCCCGGUucaggucgauGACCgCGa -3'
miRNA:   3'- caUGCCgGUCGgUGGGCCA----------CUGGaGC- -5'
19245 5' -60.6 NC_004684.1 + 28111 0.66 0.503081
Target:  5'- gGUGCGGUUcgaGGCCuugCUGGUGGCCUg- -3'
miRNA:   3'- -CAUGCCGG---UCGGug-GGCCACUGGAgc -5'
19245 5' -60.6 NC_004684.1 + 13981 0.66 0.493237
Target:  5'- -cGCGGCgcaGGCCAgCCCGGccACCUgGa -3'
miRNA:   3'- caUGCCGg--UCGGU-GGGCCacUGGAgC- -5'
19245 5' -60.6 NC_004684.1 + 1235 0.66 0.483482
Target:  5'- -gGCGGCCuggucGGUCGCCCGGccccGGCC-Ca -3'
miRNA:   3'- caUGCCGG-----UCGGUGGGCCa---CUGGaGc -5'
19245 5' -60.6 NC_004684.1 + 51043 0.66 0.493237
Target:  5'- aUGCGGCCA-CCG-CCGGUGACgaUGc -3'
miRNA:   3'- cAUGCCGGUcGGUgGGCCACUGgaGC- -5'
19245 5' -60.6 NC_004684.1 + 59438 0.66 0.493237
Target:  5'- -gGCGGCCuuGCC-CaCCGGUGugCgcCGg -3'
miRNA:   3'- caUGCCGGu-CGGuG-GGCCACugGa-GC- -5'
19245 5' -60.6 NC_004684.1 + 25869 0.66 0.480574
Target:  5'- -aACGGCCucGGCCagGCCgggcagaacgucagCGGUGACCUg- -3'
miRNA:   3'- caUGCCGG--UCGG--UGG--------------GCCACUGGAgc -5'
19245 5' -60.6 NC_004684.1 + 65444 0.66 0.51301
Target:  5'- cGUGCGGCgcgCGGCCACCgugcgcCGGUaccaGGCC-CGg -3'
miRNA:   3'- -CAUGCCG---GUCGGUGG------GCCA----CUGGaGC- -5'
19245 5' -60.6 NC_004684.1 + 23561 0.66 0.493237
Target:  5'- -cGCGGCCuggacAGCCugCCGG--GCCgcgCGa -3'
miRNA:   3'- caUGCCGG-----UCGGugGGCCacUGGa--GC- -5'
19245 5' -60.6 NC_004684.1 + 39033 0.66 0.502093
Target:  5'- cUACGGCuCGGCgguguccauugugCGCCgGGUGGCCagCGu -3'
miRNA:   3'- cAUGCCG-GUCG-------------GUGGgCCACUGGa-GC- -5'
19245 5' -60.6 NC_004684.1 + 44506 0.66 0.493237
Target:  5'- uGUACGuGUCguccagcgucuuGGCCGCCgUGGUGGCC-CGg -3'
miRNA:   3'- -CAUGC-CGG------------UCGGUGG-GCCACUGGaGC- -5'
19245 5' -60.6 NC_004684.1 + 22190 0.66 0.522014
Target:  5'- -gGCGGCgA-CCGCCUucggacuggcgcaGGUGGCCUCc -3'
miRNA:   3'- caUGCCGgUcGGUGGG-------------CCACUGGAGc -5'
19245 5' -60.6 NC_004684.1 + 40459 0.66 0.503081
Target:  5'- -gGCGGCC-GCCugCuCGGgGGUCUCGg -3'
miRNA:   3'- caUGCCGGuCGGugG-GCCaCUGGAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.