miRNA display CGI


Results 1 - 20 of 143 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19245 5' -60.6 NC_004684.1 + 8577 0.7 0.283763
Target:  5'- -gAUGaGCCuGCCgagcaugaacGCgCCGGUGGCCUCGa -3'
miRNA:   3'- caUGC-CGGuCGG----------UG-GGCCACUGGAGC- -5'
19245 5' -60.6 NC_004684.1 + 9727 0.71 0.257582
Target:  5'- --gUGGCC-GCUACCCGGUGAguCCaUCGa -3'
miRNA:   3'- cauGCCGGuCGGUGGGCCACU--GG-AGC- -5'
19245 5' -60.6 NC_004684.1 + 60604 0.71 0.257582
Target:  5'- gGUGCgcaGGCCGGUCACCCGGcGcACgUCGc -3'
miRNA:   3'- -CAUG---CCGGUCGGUGGGCCaC-UGgAGC- -5'
19245 5' -60.6 NC_004684.1 + 65573 0.71 0.257582
Target:  5'- -cGCaGGUCAGCCGCCa--UGGCCUCGg -3'
miRNA:   3'- caUG-CCGGUCGGUGGgccACUGGAGC- -5'
19245 5' -60.6 NC_004684.1 + 49276 0.71 0.263937
Target:  5'- -gGCGGuguccacaCCGGCCucgcGCUCGGUGGCCUUGc -3'
miRNA:   3'- caUGCC--------GGUCGG----UGGGCCACUGGAGC- -5'
19245 5' -60.6 NC_004684.1 + 66632 0.7 0.277026
Target:  5'- cUGCGGCCuuGGUgGCCaCGaUGGCCUCGg -3'
miRNA:   3'- cAUGCCGG--UCGgUGG-GCcACUGGAGC- -5'
19245 5' -60.6 NC_004684.1 + 64539 0.7 0.277026
Target:  5'- -aGCGGCuCGGCgGCCuUGGUGACCg-- -3'
miRNA:   3'- caUGCCG-GUCGgUGG-GCCACUGGagc -5'
19245 5' -60.6 NC_004684.1 + 66735 0.7 0.283083
Target:  5'- -gACGGUCuugcgcaCCACCCGGUacagcaccccggcGACCUCGg -3'
miRNA:   3'- caUGCCGGuc-----GGUGGGCCA-------------CUGGAGC- -5'
19245 5' -60.6 NC_004684.1 + 37498 0.7 0.283763
Target:  5'- uGUACGaCCcGCCACCCGGUuacgacGACCUg- -3'
miRNA:   3'- -CAUGCcGGuCGGUGGGCCA------CUGGAgc -5'
19245 5' -60.6 NC_004684.1 + 37638 0.71 0.251354
Target:  5'- gGUGCgcuGGCCAugGCCGCCCGGUcaggcaucGACC-CGg -3'
miRNA:   3'- -CAUG---CCGGU--CGGUGGGCCA--------CUGGaGC- -5'
19245 5' -60.6 NC_004684.1 + 45815 0.71 0.245249
Target:  5'- cGUGCGGCau-UgACCCGGUGacgGCCUCGg -3'
miRNA:   3'- -CAUGCCGgucGgUGGGCCAC---UGGAGC- -5'
19245 5' -60.6 NC_004684.1 + 39089 0.72 0.227674
Target:  5'- ---aGGCCGGUggugccuacgCACCCGGUGACCg-- -3'
miRNA:   3'- caugCCGGUCG----------GUGGGCCACUGGagc -5'
19245 5' -60.6 NC_004684.1 + 25333 0.79 0.065585
Target:  5'- cGUAUGG-CGGCCucCCCGGUGGCCUUGg -3'
miRNA:   3'- -CAUGCCgGUCGGu-GGGCCACUGGAGC- -5'
19245 5' -60.6 NC_004684.1 + 54896 0.75 0.129035
Target:  5'- cGUGCGGCacgaGGCgGCCCuGGUGGCCgagCGu -3'
miRNA:   3'- -CAUGCCGg---UCGgUGGG-CCACUGGa--GC- -5'
19245 5' -60.6 NC_004684.1 + 61157 0.75 0.144936
Target:  5'- uGUAcuCGGUCAGCCACCCGGccaggucggcgggguUGgugGCCUCGg -3'
miRNA:   3'- -CAU--GCCGGUCGGUGGGCC---------------AC---UGGAGC- -5'
19245 5' -60.6 NC_004684.1 + 41345 0.73 0.185493
Target:  5'- -gACGGCCgggccaaGGCCACCCGGUucaucGACCg-- -3'
miRNA:   3'- caUGCCGG-------UCGGUGGGCCA-----CUGGagc -5'
19245 5' -60.6 NC_004684.1 + 57306 0.73 0.185969
Target:  5'- --cCGGCCAGCCcuGCCCGGUcGACUggcCGu -3'
miRNA:   3'- cauGCCGGUCGG--UGGGCCA-CUGGa--GC- -5'
19245 5' -60.6 NC_004684.1 + 20326 0.73 0.190788
Target:  5'- -gGCGGCCAucgagaucggcGUCGCCCGGUGcACCgUCa -3'
miRNA:   3'- caUGCCGGU-----------CGGUGGGCCAC-UGG-AGc -5'
19245 5' -60.6 NC_004684.1 + 4886 0.72 0.200248
Target:  5'- -gGCGGCUcaGGCgGCCUGGUcgccaccGGCCUCGg -3'
miRNA:   3'- caUGCCGG--UCGgUGGGCCA-------CUGGAGC- -5'
19245 5' -60.6 NC_004684.1 + 28784 0.72 0.227674
Target:  5'- -aGCGGCauGCCACCCGGUuccgagcugGugCUCGa -3'
miRNA:   3'- caUGCCGguCGGUGGGCCA---------CugGAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.