miRNA display CGI


Results 1 - 20 of 143 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19245 5' -60.6 NC_004684.1 + 337 0.68 0.383139
Target:  5'- gGUACGGCgcgaagcgugcgCAGCaGCUCGGUGGCCa-- -3'
miRNA:   3'- -CAUGCCG------------GUCGgUGGGCCACUGGagc -5'
19245 5' -60.6 NC_004684.1 + 913 0.66 0.523018
Target:  5'- ---aGGCCuagccGCCACCgGGUGGCggCGu -3'
miRNA:   3'- caugCCGGu----CGGUGGgCCACUGgaGC- -5'
19245 5' -60.6 NC_004684.1 + 1235 0.66 0.483482
Target:  5'- -gGCGGCCuggucGGUCGCCCGGccccGGCC-Ca -3'
miRNA:   3'- caUGCCGG-----UCGGUGGGCCa---CUGGaGc -5'
19245 5' -60.6 NC_004684.1 + 1407 0.7 0.290629
Target:  5'- --cUGGCCAGCgACCUGGaGGCCUg- -3'
miRNA:   3'- cauGCCGGUCGgUGGGCCaCUGGAgc -5'
19245 5' -60.6 NC_004684.1 + 1804 0.66 0.503081
Target:  5'- cGUGCGGCUcaugaccgaGGCCAUggCGGcUGACCUgCGg -3'
miRNA:   3'- -CAUGCCGG---------UCGGUGg-GCC-ACUGGA-GC- -5'
19245 5' -60.6 NC_004684.1 + 2057 0.67 0.454796
Target:  5'- cUACGGCCAgcGCCACgUGGUGGagcgcgccagCUCGc -3'
miRNA:   3'- cAUGCCGGU--CGGUGgGCCACUg---------GAGC- -5'
19245 5' -60.6 NC_004684.1 + 3634 0.69 0.312004
Target:  5'- uGU-CGGCCgcaaacuaguGGCCGCCCGGUG-CCg-- -3'
miRNA:   3'- -CAuGCCGG----------UCGGUGGGCCACuGGagc -5'
19245 5' -60.6 NC_004684.1 + 4027 0.69 0.312004
Target:  5'- -gGCGcGUCGGCCGCUCGGUGcGCUgggCGg -3'
miRNA:   3'- caUGC-CGGUCGGUGGGCCAC-UGGa--GC- -5'
19245 5' -60.6 NC_004684.1 + 4056 0.67 0.44544
Target:  5'- --cCGGCCA-UCGCCgGGUGACCgggUGg -3'
miRNA:   3'- cauGCCGGUcGGUGGgCCACUGGa--GC- -5'
19245 5' -60.6 NC_004684.1 + 4886 0.72 0.200248
Target:  5'- -gGCGGCUcaGGCgGCCUGGUcgccaccGGCCUCGg -3'
miRNA:   3'- caUGCCGG--UCGgUGGGCCA-------CUGGAGC- -5'
19245 5' -60.6 NC_004684.1 + 5948 0.66 0.493237
Target:  5'- -gGCGGUCcaaccuGGCCGCgCCGGUGAgCgacCGg -3'
miRNA:   3'- caUGCCGG------UCGGUG-GGCCACUgGa--GC- -5'
19245 5' -60.6 NC_004684.1 + 6164 0.67 0.451041
Target:  5'- -gGCGGCCAGCgugcggcgguaggCACCgGGcagguacaugucgaUGGCCUCc -3'
miRNA:   3'- caUGCCGGUCG-------------GUGGgCC--------------ACUGGAGc -5'
19245 5' -60.6 NC_004684.1 + 6653 0.67 0.40913
Target:  5'- --cCGG-CGGCCACCCGGUcGCCgggCa -3'
miRNA:   3'- cauGCCgGUCGGUGGGCCAcUGGa--Gc -5'
19245 5' -60.6 NC_004684.1 + 7505 0.67 0.418034
Target:  5'- cUACGcGCUGGCCGCCgCGcgcGUGACC-CGa -3'
miRNA:   3'- cAUGC-CGGUCGGUGG-GC---CACUGGaGC- -5'
19245 5' -60.6 NC_004684.1 + 7580 0.66 0.501105
Target:  5'- gGUGCGGCUggugcgcGGCaACCCGGUGgucguguACUUCa -3'
miRNA:   3'- -CAUGCCGG-------UCGgUGGGCCAC-------UGGAGc -5'
19245 5' -60.6 NC_004684.1 + 7912 0.68 0.395131
Target:  5'- -gGCcGCCAGCCAgCCGGUGgagaacccaggcaagGCCUUc -3'
miRNA:   3'- caUGcCGGUCGGUgGGCCAC---------------UGGAGc -5'
19245 5' -60.6 NC_004684.1 + 8577 0.7 0.283763
Target:  5'- -gAUGaGCCuGCCgagcaugaacGCgCCGGUGGCCUCGa -3'
miRNA:   3'- caUGC-CGGuCGG----------UG-GGCCACUGGAGC- -5'
19245 5' -60.6 NC_004684.1 + 8673 0.7 0.270418
Target:  5'- gGUGCGGCCAGgUGCCU-GUGGCCgugCGu -3'
miRNA:   3'- -CAUGCCGGUCgGUGGGcCACUGGa--GC- -5'
19245 5' -60.6 NC_004684.1 + 8770 0.66 0.493237
Target:  5'- -cGCGGCacCAGCCGCCaCGG--GCCgUCGa -3'
miRNA:   3'- caUGCCG--GUCGGUGG-GCCacUGG-AGC- -5'
19245 5' -60.6 NC_004684.1 + 9227 0.67 0.44544
Target:  5'- -gGCGGCaCAGUCGcaccggcucCCCGGUGAUCg-- -3'
miRNA:   3'- caUGCCG-GUCGGU---------GGGCCACUGGagc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.