Results 1 - 20 of 143 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
19245 | 5' | -60.6 | NC_004684.1 | + | 57623 | 1.07 | 0.000586 |
Target: 5'- gGUACGGCCAGCCACCCGGUGACCUCGc -3' miRNA: 3'- -CAUGCCGGUCGGUGGGCCACUGGAGC- -5' |
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19245 | 5' | -60.6 | NC_004684.1 | + | 61448 | 0.8 | 0.057142 |
Target: 5'- -cGCGGCCAGguuggaCCGCCCGGUGGCCagcgCGg -3' miRNA: 3'- caUGCCGGUC------GGUGGGCCACUGGa---GC- -5' |
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19245 | 5' | -60.6 | NC_004684.1 | + | 25333 | 0.79 | 0.065585 |
Target: 5'- cGUAUGG-CGGCCucCCCGGUGGCCUUGg -3' miRNA: 3'- -CAUGCCgGUCGGu-GGGCCACUGGAGC- -5' |
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19245 | 5' | -60.6 | NC_004684.1 | + | 54896 | 0.75 | 0.129035 |
Target: 5'- cGUGCGGCacgaGGCgGCCCuGGUGGCCgagCGu -3' miRNA: 3'- -CAUGCCGg---UCGgUGGG-CCACUGGa--GC- -5' |
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19245 | 5' | -60.6 | NC_004684.1 | + | 61157 | 0.75 | 0.144936 |
Target: 5'- uGUAcuCGGUCAGCCACCCGGccaggucggcgggguUGgugGCCUCGg -3' miRNA: 3'- -CAU--GCCGGUCGGUGGGCC---------------AC---UGGAGC- -5' |
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19245 | 5' | -60.6 | NC_004684.1 | + | 27627 | 0.74 | 0.167751 |
Target: 5'- -aACGGCCAggacgccauGCCACCCGGUcucauGACCaCGg -3' miRNA: 3'- caUGCCGGU---------CGGUGGGCCA-----CUGGaGC- -5' |
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19245 | 5' | -60.6 | NC_004684.1 | + | 41345 | 0.73 | 0.185493 |
Target: 5'- -gACGGCCgggccaaGGCCACCCGGUucaucGACCg-- -3' miRNA: 3'- caUGCCGG-------UCGGUGGGCCA-----CUGGagc -5' |
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19245 | 5' | -60.6 | NC_004684.1 | + | 66246 | 0.73 | 0.185493 |
Target: 5'- -cACGGUCGGCaCGCCCGGcaugccgUGGCCgUCGa -3' miRNA: 3'- caUGCCGGUCG-GUGGGCC-------ACUGG-AGC- -5' |
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19245 | 5' | -60.6 | NC_004684.1 | + | 57306 | 0.73 | 0.185969 |
Target: 5'- --cCGGCCAGCCcuGCCCGGUcGACUggcCGu -3' miRNA: 3'- cauGCCGGUCGG--UGGGCCA-CUGGa--GC- -5' |
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19245 | 5' | -60.6 | NC_004684.1 | + | 20326 | 0.73 | 0.190788 |
Target: 5'- -gGCGGCCAucgagaucggcGUCGCCCGGUGcACCgUCa -3' miRNA: 3'- caUGCCGGU-----------CGGUGGGCCAC-UGG-AGc -5' |
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19245 | 5' | -60.6 | NC_004684.1 | + | 4886 | 0.72 | 0.200248 |
Target: 5'- -gGCGGCUcaGGCgGCCUGGUcgccaccGGCCUCGg -3' miRNA: 3'- caUGCCGG--UCGgUGGGCCA-------CUGGAGC- -5' |
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19245 | 5' | -60.6 | NC_004684.1 | + | 14216 | 0.72 | 0.211176 |
Target: 5'- -cGCGGUCGGCCugucCCCGGaGGCCUUc -3' miRNA: 3'- caUGCCGGUCGGu---GGGCCaCUGGAGc -5' |
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19245 | 5' | -60.6 | NC_004684.1 | + | 16282 | 0.72 | 0.222056 |
Target: 5'- -cGCGGCCAuGCCugCCagucGUGACUUCa -3' miRNA: 3'- caUGCCGGU-CGGugGGc---CACUGGAGc -5' |
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19245 | 5' | -60.6 | NC_004684.1 | + | 17293 | 0.72 | 0.227107 |
Target: 5'- -gGgGGCCAGCCGCCUGGUcguggugGACUgCGa -3' miRNA: 3'- caUgCCGGUCGGUGGGCCA-------CUGGaGC- -5' |
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19245 | 5' | -60.6 | NC_004684.1 | + | 39089 | 0.72 | 0.227674 |
Target: 5'- ---aGGCCGGUggugccuacgCACCCGGUGACCg-- -3' miRNA: 3'- caugCCGGUCG----------GUGGGCCACUGGagc -5' |
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19245 | 5' | -60.6 | NC_004684.1 | + | 28784 | 0.72 | 0.227674 |
Target: 5'- -aGCGGCauGCCACCCGGUuccgagcugGugCUCGa -3' miRNA: 3'- caUGCCGguCGGUGGGCCA---------CugGAGC- -5' |
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19245 | 5' | -60.6 | NC_004684.1 | + | 45815 | 0.71 | 0.245249 |
Target: 5'- cGUGCGGCau-UgACCCGGUGacgGCCUCGg -3' miRNA: 3'- -CAUGCCGgucGgUGGGCCAC---UGGAGC- -5' |
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19245 | 5' | -60.6 | NC_004684.1 | + | 37638 | 0.71 | 0.251354 |
Target: 5'- gGUGCgcuGGCCAugGCCGCCCGGUcaggcaucGACC-CGg -3' miRNA: 3'- -CAUG---CCGGU--CGGUGGGCCA--------CUGGaGC- -5' |
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19245 | 5' | -60.6 | NC_004684.1 | + | 65573 | 0.71 | 0.257582 |
Target: 5'- -cGCaGGUCAGCCGCCa--UGGCCUCGg -3' miRNA: 3'- caUG-CCGGUCGGUGGgccACUGGAGC- -5' |
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19245 | 5' | -60.6 | NC_004684.1 | + | 60604 | 0.71 | 0.257582 |
Target: 5'- gGUGCgcaGGCCGGUCACCCGGcGcACgUCGc -3' miRNA: 3'- -CAUG---CCGGUCGGUGGGCCaC-UGgAGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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