miRNA display CGI


Results 1 - 20 of 166 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19248 3' -60.6 NC_004684.1 + 4419 0.66 0.463205
Target:  5'- -gGCCGCCGgaaCAacGCgcggGCCUGCUGGcGCAg -3'
miRNA:   3'- caCGGCGGUg--GU--CG----UGGACGACC-UGU- -5'
19248 3' -60.6 NC_004684.1 + 37196 0.66 0.472938
Target:  5'- -cGCgCGCgGCCAGCugCUGgUGuGCGu -3'
miRNA:   3'- caCG-GCGgUGGUCGugGACgACcUGU- -5'
19248 3' -60.6 NC_004684.1 + 46953 0.66 0.472938
Target:  5'- -cGCCGCCguGCaCAGCGCCagGCUGa--- -3'
miRNA:   3'- caCGGCGG--UG-GUCGUGGa-CGACcugu -5'
19248 3' -60.6 NC_004684.1 + 10137 0.66 0.443113
Target:  5'- -cGCCGCUgaccucgugcucaGCCAGcCGCC-GCUGGcCAc -3'
miRNA:   3'- caCGGCGG-------------UGGUC-GUGGaCGACCuGU- -5'
19248 3' -60.6 NC_004684.1 + 25204 0.66 0.47196
Target:  5'- -cGCUGgCACCGGguggcuuCACCggcacGCUGGACGc -3'
miRNA:   3'- caCGGCgGUGGUC-------GUGGa----CGACCUGU- -5'
19248 3' -60.6 NC_004684.1 + 56911 0.66 0.434655
Target:  5'- -gGCCGCCAUCGuGUccuCCUGcCUGGAg- -3'
miRNA:   3'- caCGGCGGUGGU-CGu--GGAC-GACCUgu -5'
19248 3' -60.6 NC_004684.1 + 65767 0.66 0.463205
Target:  5'- -gGCCGCCGC--GCGCC-GgUGGGCGc -3'
miRNA:   3'- caCGGCGGUGguCGUGGaCgACCUGU- -5'
19248 3' -60.6 NC_004684.1 + 23632 0.66 0.472938
Target:  5'- -cGCUGUC-CCGGC-CUUGCUGG-CAc -3'
miRNA:   3'- caCGGCGGuGGUCGuGGACGACCuGU- -5'
19248 3' -60.6 NC_004684.1 + 55670 0.66 0.463205
Target:  5'- -gGCgGCgCACCAGC---UGCUGGACc -3'
miRNA:   3'- caCGgCG-GUGGUCGuggACGACCUGu -5'
19248 3' -60.6 NC_004684.1 + 37126 0.66 0.440284
Target:  5'- -gGCgUGCCGCCAGCGCaCUGCgccgccaguucugGGAg- -3'
miRNA:   3'- caCG-GCGGUGGUCGUG-GACGa------------CCUgu -5'
19248 3' -60.6 NC_004684.1 + 27123 0.66 0.425366
Target:  5'- -gGCCGUUGCCGGgaCGCUgaucgacgUGCUGGGCGa -3'
miRNA:   3'- caCGGCGGUGGUC--GUGG--------ACGACCUGU- -5'
19248 3' -60.6 NC_004684.1 + 15700 0.66 0.463205
Target:  5'- -cGaCGCCACCGGCAUCgUGCUcccGGAg- -3'
miRNA:   3'- caCgGCGGUGGUCGUGG-ACGA---CCUgu -5'
19248 3' -60.6 NC_004684.1 + 7901 0.66 0.472938
Target:  5'- cGUGCCcuggugGCCGCCAGCcaGCC-GgUGGAgAa -3'
miRNA:   3'- -CACGG------CGGUGGUCG--UGGaCgACCUgU- -5'
19248 3' -60.6 NC_004684.1 + 19776 0.66 0.43372
Target:  5'- gGUGcCCGCCGggGGCgacaagauggcggGCCUGCUGGcCAa -3'
miRNA:   3'- -CAC-GGCGGUggUCG-------------UGGACGACCuGU- -5'
19248 3' -60.6 NC_004684.1 + 11951 0.66 0.444059
Target:  5'- -gGUCGCCAgCCuGGCACCUGC-GG-CGc -3'
miRNA:   3'- caCGGCGGU-GG-UCGUGGACGaCCuGU- -5'
19248 3' -60.6 NC_004684.1 + 10338 0.66 0.425366
Target:  5'- -gGCCGCCAUCGacccCGCCggGgaGGACAu -3'
miRNA:   3'- caCGGCGGUGGUc---GUGGa-CgaCCUGU- -5'
19248 3' -60.6 NC_004684.1 + 57875 0.66 0.425366
Target:  5'- -gGCaCGCCagACCGGUGCUgGCUGGugGc -3'
miRNA:   3'- caCG-GCGG--UGGUCGUGGaCGACCugU- -5'
19248 3' -60.6 NC_004684.1 + 28728 0.66 0.463205
Target:  5'- -gGCgCGUCugCGGCACCgacgugcggUGCgaGGACAa -3'
miRNA:   3'- caCG-GCGGugGUCGUGG---------ACGa-CCUGU- -5'
19248 3' -60.6 NC_004684.1 + 28570 0.66 0.416198
Target:  5'- --cCCGCCACCGGUgugcggcggcuGCCUGCcGGuCGg -3'
miRNA:   3'- cacGGCGGUGGUCG-----------UGGACGaCCuGU- -5'
19248 3' -60.6 NC_004684.1 + 53399 0.66 0.453577
Target:  5'- cGUGCCGUCGggcaacugcuCCAGgucuGCCUGCgucaGGACGa -3'
miRNA:   3'- -CACGGCGGU----------GGUCg---UGGACGa---CCUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.