miRNA display CGI


Results 1 - 20 of 166 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19248 3' -60.6 NC_004684.1 + 401 0.66 0.444059
Target:  5'- -cGCCGUgGCgGGCAa--GCUGGGCGa -3'
miRNA:   3'- caCGGCGgUGgUCGUggaCGACCUGU- -5'
19248 3' -60.6 NC_004684.1 + 518 0.78 0.068294
Target:  5'- -gGUCGCCACCGGCGCUgacgUGCUGGcCAg -3'
miRNA:   3'- caCGGCGGUGGUCGUGG----ACGACCuGU- -5'
19248 3' -60.6 NC_004684.1 + 949 0.69 0.298492
Target:  5'- -cGCCGCCACCcugacguaaagucGUACCUGUacggcgGGACGg -3'
miRNA:   3'- caCGGCGGUGGu------------CGUGGACGa-----CCUGU- -5'
19248 3' -60.6 NC_004684.1 + 1211 0.67 0.389432
Target:  5'- -gGCCaCCACCAcCACCaccgGCUGGAUc -3'
miRNA:   3'- caCGGcGGUGGUcGUGGa---CGACCUGu -5'
19248 3' -60.6 NC_004684.1 + 1394 0.7 0.266747
Target:  5'- -gGCCGCCguugcacugGCCAGCgaccuggagGCCUGCcGGGCc -3'
miRNA:   3'- caCGGCGG---------UGGUCG---------UGGACGaCCUGu -5'
19248 3' -60.6 NC_004684.1 + 1540 0.67 0.388559
Target:  5'- -gGUgGCCACCAGCggcccccacaaccGCCUGCUGa--- -3'
miRNA:   3'- caCGgCGGUGGUCG-------------UGGACGACcugu -5'
19248 3' -60.6 NC_004684.1 + 1697 0.67 0.407151
Target:  5'- cUGgCGCgCAUCgagcgcaagaAGCGCCUGCUGGcGCAg -3'
miRNA:   3'- cACgGCG-GUGG----------UCGUGGACGACC-UGU- -5'
19248 3' -60.6 NC_004684.1 + 1963 0.67 0.389432
Target:  5'- -cGCCGCaCGCCAGCGCagcGcCUGGcGCGc -3'
miRNA:   3'- caCGGCG-GUGGUCGUGga-C-GACC-UGU- -5'
19248 3' -60.6 NC_004684.1 + 2056 0.66 0.425366
Target:  5'- -gGCCGCCAUCGugGCCUGcCUGG-CGc -3'
miRNA:   3'- caCGGCGGUGGUcgUGGAC-GACCuGU- -5'
19248 3' -60.6 NC_004684.1 + 2531 0.66 0.444059
Target:  5'- cUGCgGaCgCugCGGCACCUGCgUGGAg- -3'
miRNA:   3'- cACGgC-G-GugGUCGUGGACG-ACCUgu -5'
19248 3' -60.6 NC_004684.1 + 2941 0.68 0.331524
Target:  5'- gGUGCCgagcaccgagGCCAUCGGCGCgCUGCUGuuGCGg -3'
miRNA:   3'- -CACGG----------CGGUGGUCGUG-GACGACc-UGU- -5'
19248 3' -60.6 NC_004684.1 + 3485 0.68 0.319209
Target:  5'- -cGCCGUUAcCCGGUACCUggaccaccuggcaccGCUGGGCc -3'
miRNA:   3'- caCGGCGGU-GGUCGUGGA---------------CGACCUGu -5'
19248 3' -60.6 NC_004684.1 + 3567 0.67 0.395576
Target:  5'- -cGCCGCgccauccgcaccauCACCAGCACCacgGUcgcGGACAc -3'
miRNA:   3'- caCGGCG--------------GUGGUCGUGGa--CGa--CCUGU- -5'
19248 3' -60.6 NC_004684.1 + 3799 0.77 0.078518
Target:  5'- -cGCCGCCGCCuuggcggucaAGgAUCUGCUGGGCGc -3'
miRNA:   3'- caCGGCGGUGG----------UCgUGGACGACCUGU- -5'
19248 3' -60.6 NC_004684.1 + 4013 0.72 0.186789
Target:  5'- -cGCCGCCAUCGGCuggcgcgucgGCCgcucggugcGCUGGGCGg -3'
miRNA:   3'- caCGGCGGUGGUCG----------UGGa--------CGACCUGU- -5'
19248 3' -60.6 NC_004684.1 + 4419 0.66 0.463205
Target:  5'- -gGCCGCCGgaaCAacGCgcggGCCUGCUGGcGCAg -3'
miRNA:   3'- caCGGCGGUg--GU--CG----UGGACGACC-UGU- -5'
19248 3' -60.6 NC_004684.1 + 4436 0.67 0.372226
Target:  5'- -aGCaCGCCACCAucgucggcgcGCGCCgcgcGCUGGuCGg -3'
miRNA:   3'- caCG-GCGGUGGU----------CGUGGa---CGACCuGU- -5'
19248 3' -60.6 NC_004684.1 + 5861 0.69 0.294191
Target:  5'- -aGCgGCaCGCCAGCGCCugcacgucacUGCUGGcGCGc -3'
miRNA:   3'- caCGgCG-GUGGUCGUGG----------ACGACC-UGU- -5'
19248 3' -60.6 NC_004684.1 + 6140 0.66 0.425366
Target:  5'- --aCCGCCGCCauGGC-CCUGCUGuuCAa -3'
miRNA:   3'- cacGGCGGUGG--UCGuGGACGACcuGU- -5'
19248 3' -60.6 NC_004684.1 + 6331 0.77 0.085339
Target:  5'- aUGCCGCCACCGGCccguauuguugaACCUGUacggcgGGACGc -3'
miRNA:   3'- cACGGCGGUGGUCG------------UGGACGa-----CCUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.