miRNA display CGI


Results 1 - 20 of 166 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19248 3' -60.6 NC_004684.1 + 13642 0.69 0.308718
Target:  5'- -cGCCGCCGC--GCACCUGCgUGGu-- -3'
miRNA:   3'- caCGGCGGUGguCGUGGACG-ACCugu -5'
19248 3' -60.6 NC_004684.1 + 15118 0.71 0.229512
Target:  5'- uUGCCGUCACCGGgAC--GCUGGGCc -3'
miRNA:   3'- cACGGCGGUGGUCgUGgaCGACCUGu -5'
19248 3' -60.6 NC_004684.1 + 29792 0.7 0.241411
Target:  5'- cGUGCgGUaCACCGGCACCUaCcgGGACAc -3'
miRNA:   3'- -CACGgCG-GUGGUCGUGGAcGa-CCUGU- -5'
19248 3' -60.6 NC_004684.1 + 26131 0.7 0.241411
Target:  5'- -cGaCCG-CACCAGCACCUcGCUGGcCGc -3'
miRNA:   3'- caC-GGCgGUGGUCGUGGA-CGACCuGU- -5'
19248 3' -60.6 NC_004684.1 + 48748 0.7 0.260218
Target:  5'- -gGCagGCCAuguCCAGCGCCacGCUGGACu -3'
miRNA:   3'- caCGg-CGGU---GGUCGUGGa-CGACCUGu -5'
19248 3' -60.6 NC_004684.1 + 40492 0.7 0.266747
Target:  5'- -cGCCGagugCGCCAGCACCUGgUuGACGc -3'
miRNA:   3'- caCGGCg---GUGGUCGUGGACgAcCUGU- -5'
19248 3' -60.6 NC_004684.1 + 11696 0.69 0.294191
Target:  5'- -aGCUGCgCACUAcgacaacgcuGaCGCCUGCUGGGCGu -3'
miRNA:   3'- caCGGCG-GUGGU----------C-GUGGACGACCUGU- -5'
19248 3' -60.6 NC_004684.1 + 36761 0.69 0.294191
Target:  5'- -cGCCGCCAgggccgcgcCCGGUGCCgacGCUGGuCGg -3'
miRNA:   3'- caCGGCGGU---------GGUCGUGGa--CGACCuGU- -5'
19248 3' -60.6 NC_004684.1 + 24738 0.69 0.308718
Target:  5'- cGUGCUG-CGCCAGauucgugACCUGCUGG-CAg -3'
miRNA:   3'- -CACGGCgGUGGUCg------UGGACGACCuGU- -5'
19248 3' -60.6 NC_004684.1 + 48715 0.71 0.223751
Target:  5'- -gGCgGCCcuGCCAGCGCUUGCcGGugGc -3'
miRNA:   3'- caCGgCGG--UGGUCGUGGACGaCCugU- -5'
19248 3' -60.6 NC_004684.1 + 65062 0.71 0.207201
Target:  5'- aUGaCCGCCGCCAGUucguCCUGCgcGGugAu -3'
miRNA:   3'- cAC-GGCGGUGGUCGu---GGACGa-CCugU- -5'
19248 3' -60.6 NC_004684.1 + 46975 0.72 0.196764
Target:  5'- -gGCUGCCACCAGUACCcgaUGC-GGAa- -3'
miRNA:   3'- caCGGCGGUGGUCGUGG---ACGaCCUgu -5'
19248 3' -60.6 NC_004684.1 + 16583 0.81 0.042294
Target:  5'- cGUGguaCCGCCGCCAGCGUCUGCUGGugGc -3'
miRNA:   3'- -CAC---GGCGGUGGUCGUGGACGACCugU- -5'
19248 3' -60.6 NC_004684.1 + 3799 0.77 0.078518
Target:  5'- -cGCCGCCGCCuuggcggucaAGgAUCUGCUGGGCGc -3'
miRNA:   3'- caCGGCGGUGG----------UCgUGGACGACCUGU- -5'
19248 3' -60.6 NC_004684.1 + 15167 0.77 0.083005
Target:  5'- -cGCCGCCGCCAcGCACCUG--GGACu -3'
miRNA:   3'- caCGGCGGUGGU-CGUGGACgaCCUGu -5'
19248 3' -60.6 NC_004684.1 + 26407 0.77 0.085339
Target:  5'- -cGCCGCCACCGGCGC--GCUGG-CAg -3'
miRNA:   3'- caCGGCGGUGGUCGUGgaCGACCuGU- -5'
19248 3' -60.6 NC_004684.1 + 8865 0.77 0.087735
Target:  5'- cGUGUCGCC-UgAGCGCCUGCUGGGa- -3'
miRNA:   3'- -CACGGCGGuGgUCGUGGACGACCUgu -5'
19248 3' -60.6 NC_004684.1 + 18478 0.75 0.106388
Target:  5'- gGUGCUGUCGguguCCGGCACCgccaccGCUGGGCAg -3'
miRNA:   3'- -CACGGCGGU----GGUCGUGGa-----CGACCUGU- -5'
19248 3' -60.6 NC_004684.1 + 24180 0.73 0.15123
Target:  5'- gGUGCCGCCgcccaaaauGCCGGUGCCUGCggugcccGACAu -3'
miRNA:   3'- -CACGGCGG---------UGGUCGUGGACGac-----CUGU- -5'
19248 3' -60.6 NC_004684.1 + 24912 0.73 0.168169
Target:  5'- -cGCCGCCGCgauCAGCGC--GCUGGGCGg -3'
miRNA:   3'- caCGGCGGUG---GUCGUGgaCGACCUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.