miRNA display CGI


Results 1 - 20 of 166 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19248 3' -60.6 NC_004684.1 + 58179 1.08 0.000394
Target:  5'- uGUGCCGCCACCAGCACCUGCUGGACAa -3'
miRNA:   3'- -CACGGCGGUGGUCGUGGACGACCUGU- -5'
19248 3' -60.6 NC_004684.1 + 16583 0.81 0.042294
Target:  5'- cGUGguaCCGCCGCCAGCGUCUGCUGGugGc -3'
miRNA:   3'- -CAC---GGCGGUGGUCGUGGACGACCugU- -5'
19248 3' -60.6 NC_004684.1 + 47280 0.79 0.059359
Target:  5'- gGUGCCGCCGcCCAGCGgUgGCUGGACc -3'
miRNA:   3'- -CACGGCGGU-GGUCGUgGaCGACCUGu -5'
19248 3' -60.6 NC_004684.1 + 518 0.78 0.068294
Target:  5'- -gGUCGCCACCGGCGCUgacgUGCUGGcCAg -3'
miRNA:   3'- caCGGCGGUGGUCGUGG----ACGACCuGU- -5'
19248 3' -60.6 NC_004684.1 + 3799 0.77 0.078518
Target:  5'- -cGCCGCCGCCuuggcggucaAGgAUCUGCUGGGCGc -3'
miRNA:   3'- caCGGCGGUGG----------UCgUGGACGACCUGU- -5'
19248 3' -60.6 NC_004684.1 + 15167 0.77 0.083005
Target:  5'- -cGCCGCCGCCAcGCACCUG--GGACu -3'
miRNA:   3'- caCGGCGGUGGU-CGUGGACgaCCUGu -5'
19248 3' -60.6 NC_004684.1 + 26407 0.77 0.085339
Target:  5'- -cGCCGCCACCGGCGC--GCUGG-CAg -3'
miRNA:   3'- caCGGCGGUGGUCGUGgaCGACCuGU- -5'
19248 3' -60.6 NC_004684.1 + 6331 0.77 0.085339
Target:  5'- aUGCCGCCACCGGCccguauuguugaACCUGUacggcgGGACGc -3'
miRNA:   3'- cACGGCGGUGGUCG------------UGGACGa-----CCUGU- -5'
19248 3' -60.6 NC_004684.1 + 8865 0.77 0.087735
Target:  5'- cGUGUCGCC-UgAGCGCCUGCUGGGa- -3'
miRNA:   3'- -CACGGCGGuGgUCGUGGACGACCUgu -5'
19248 3' -60.6 NC_004684.1 + 18478 0.75 0.106388
Target:  5'- gGUGCUGUCGguguCCGGCACCgccaccGCUGGGCAg -3'
miRNA:   3'- -CACGGCGGU----GGUCGUGGa-----CGACCUGU- -5'
19248 3' -60.6 NC_004684.1 + 47395 0.75 0.118661
Target:  5'- gGUGCgGucacaggaCCACCGGUGCCUGCUGGAg- -3'
miRNA:   3'- -CACGgC--------GGUGGUCGUGGACGACCUgu -5'
19248 3' -60.6 NC_004684.1 + 23928 0.75 0.118661
Target:  5'- cUGCUGCCGCC-GCACCUGCUGc--- -3'
miRNA:   3'- cACGGCGGUGGuCGUGGACGACcugu -5'
19248 3' -60.6 NC_004684.1 + 27048 0.74 0.125282
Target:  5'- -gGCCGCCGCCAGCgACCUGCccaGCGc -3'
miRNA:   3'- caCGGCGGUGGUCG-UGGACGaccUGU- -5'
19248 3' -60.6 NC_004684.1 + 8871 0.74 0.135856
Target:  5'- -cGCCGCCGCCaacGGCAC--GCUGGACc -3'
miRNA:   3'- caCGGCGGUGG---UCGUGgaCGACCUGu -5'
19248 3' -60.6 NC_004684.1 + 13663 0.74 0.143355
Target:  5'- -gGCCGUCGaacCCGGCACCaUGCcGGACAu -3'
miRNA:   3'- caCGGCGGU---GGUCGUGG-ACGaCCUGU- -5'
19248 3' -60.6 NC_004684.1 + 45049 0.74 0.143355
Target:  5'- -cGCCGCCGCCAcCGCCUGUaccgGGugGc -3'
miRNA:   3'- caCGGCGGUGGUcGUGGACGa---CCugU- -5'
19248 3' -60.6 NC_004684.1 + 47777 0.73 0.147245
Target:  5'- gGUGUCGCCgagcgucaccGCCAGCACCUcggccgccgGaCUGGGCAg -3'
miRNA:   3'- -CACGGCGG----------UGGUCGUGGA---------C-GACCUGU- -5'
19248 3' -60.6 NC_004684.1 + 27271 0.73 0.147245
Target:  5'- gGUGCCgagGCCGCCAGCGCCcGCUacGGcCAc -3'
miRNA:   3'- -CACGG---CGGUGGUCGUGGaCGA--CCuGU- -5'
19248 3' -60.6 NC_004684.1 + 24180 0.73 0.15123
Target:  5'- gGUGCCGCCgcccaaaauGCCGGUGCCUGCggugcccGACAu -3'
miRNA:   3'- -CACGGCGG---------UGGUCGUGGACGac-----CUGU- -5'
19248 3' -60.6 NC_004684.1 + 14324 0.73 0.159497
Target:  5'- -cGCCGgUACCAGCgagucggacaccACCgUGCUGGGCAc -3'
miRNA:   3'- caCGGCgGUGGUCG------------UGG-ACGACCUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.